Gene : Phvul.L007643 P. vulgaris v2.1
Defline:  (1 of 1) PTHR22763//PTHR22763:SF40 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  61
Name:  ? Phvul.L007643 Secondary Identifier:  ? PAC:37178956
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7511 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L007643 0.5kb upstream 0.5kb upstream 2453 true scaffold_15: 511582-514034 Phaseolus vulgaris
Phvul.L007643 0.5kb upstream 0.5kb upstream 500 false scaffold_15: 513535-514034 Phaseolus vulgaris
Phvul.L007643 0.5kb downstream 0.5kb downstream 2453 true scaffold_15: 511082-513534 Phaseolus vulgaris
Phvul.L007643 0.5kb downstream 0.5kb downstream 500 false scaffold_15: 511082-511581 Phaseolus vulgaris
Phvul.L007643 1.0kb upstream 1.0kb upstream 2953 true scaffold_15: 511582-514534 Phaseolus vulgaris
Phvul.L007643 1.0kb upstream 1.0kb upstream 1000 false scaffold_15: 513535-514534 Phaseolus vulgaris
Phvul.L007643 1.0kb downstream 1.0kb downstream 2953 true scaffold_15: 510582-513534 Phaseolus vulgaris
Phvul.L007643 1.0kb downstream 1.0kb downstream 1000 false scaffold_15: 510582-511581 Phaseolus vulgaris
Phvul.L007643 2.0kb upstream 2.0kb upstream 3953 true scaffold_15: 511582-515534 Phaseolus vulgaris
Phvul.L007643 2.0kb upstream 2.0kb upstream 2000 false scaffold_15: 513535-515534 Phaseolus vulgaris
Phvul.L007643 2.0kb downstream 2.0kb downstream 3953 true scaffold_15: 509582-513534 Phaseolus vulgaris
Phvul.L007643 2.0kb downstream 2.0kb downstream 2000 false scaffold_15: 509582-511581 Phaseolus vulgaris
Phvul.L007643 5.0kb upstream 5.0kb upstream 6953 true scaffold_15: 511582-518534 Phaseolus vulgaris
Phvul.L007643 5.0kb upstream 5.0kb upstream 5000 false scaffold_15: 513535-518534 Phaseolus vulgaris
Phvul.L007643 5.0kb downstream 5.0kb downstream 6953 true scaffold_15: 506582-513534 Phaseolus vulgaris
Phvul.L007643 5.0kb downstream 5.0kb downstream 5000 false scaffold_15: 506582-511581 Phaseolus vulgaris
Phvul.L007643 10.0kb upstream 10.0kb upstream 11953 true scaffold_15: 511582-523534 Phaseolus vulgaris
Phvul.L007643 10.0kb upstream 10.0kb upstream 10000 false scaffold_15: 513535-523534 Phaseolus vulgaris
Phvul.L007643 10.0kb downstream 10.0kb downstream 11953 true scaffold_15: 501582-513534 Phaseolus vulgaris
Phvul.L007643 10.0kb downstream 10.0kb downstream 10000 false scaffold_15: 501582-511581 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296211 5265 Fabidae View MSA
124073026 5270 Rosid View MSA
123745848 5271 Pentapetalae View MSA
122795555 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.21 0.0 47.0726    
cufflinks 14.758 0.0 38.2702   Low
cufflinks 14.6555 0.0 38.0916   Low
cufflinks 39.025 0.0 103.368 High High
cufflinks 22.3447 0.0 57.8571    
cufflinks 13.3181 0.0 34.6717   Low
cufflinks 29.9991 0.0 78.5638 High  
cufflinks 22.0901 0.0 57.1594    
cufflinks 18.4983 0.0 47.8152    
cufflinks 37.3915 0.0 98.8574 High High
cufflinks 25.035 0.0 65.0676    

0 Strain