Gene : Phvul.L008443 P. vulgaris v2.1
Defline:  (1 of 1) K03872 - transcription elongation factor B, polypeptide 1 (TCEB1) Genomic Order:  69
Name:  ? Phvul.L008443 Secondary Identifier:  ? PAC:37178989
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L008443 0.5kb upstream 0.5kb upstream 2484 true scaffold_15: 551768-554251 Phaseolus vulgaris
Phvul.L008443 0.5kb upstream 0.5kb upstream 500 false scaffold_15: 551768-552267 Phaseolus vulgaris
Phvul.L008443 0.5kb downstream 0.5kb downstream 2484 true scaffold_15: 552268-554751 Phaseolus vulgaris
Phvul.L008443 0.5kb downstream 0.5kb downstream 500 false scaffold_15: 554252-554751 Phaseolus vulgaris
Phvul.L008443 1.0kb upstream 1.0kb upstream 2984 true scaffold_15: 551268-554251 Phaseolus vulgaris
Phvul.L008443 1.0kb upstream 1.0kb upstream 1000 false scaffold_15: 551268-552267 Phaseolus vulgaris
Phvul.L008443 1.0kb downstream 1.0kb downstream 2984 true scaffold_15: 552268-555251 Phaseolus vulgaris
Phvul.L008443 1.0kb downstream 1.0kb downstream 1000 false scaffold_15: 554252-555251 Phaseolus vulgaris
Phvul.L008443 2.0kb upstream 2.0kb upstream 3984 true scaffold_15: 550268-554251 Phaseolus vulgaris
Phvul.L008443 2.0kb upstream 2.0kb upstream 2000 false scaffold_15: 550268-552267 Phaseolus vulgaris
Phvul.L008443 2.0kb downstream 2.0kb downstream 3984 true scaffold_15: 552268-556251 Phaseolus vulgaris
Phvul.L008443 2.0kb downstream 2.0kb downstream 2000 false scaffold_15: 554252-556251 Phaseolus vulgaris
Phvul.L008443 5.0kb upstream 5.0kb upstream 6984 true scaffold_15: 547268-554251 Phaseolus vulgaris
Phvul.L008443 5.0kb upstream 5.0kb upstream 5000 false scaffold_15: 547268-552267 Phaseolus vulgaris
Phvul.L008443 5.0kb downstream 5.0kb downstream 6984 true scaffold_15: 552268-559251 Phaseolus vulgaris
Phvul.L008443 5.0kb downstream 5.0kb downstream 5000 false scaffold_15: 554252-559251 Phaseolus vulgaris
Phvul.L008443 10.0kb upstream 10.0kb upstream 11984 true scaffold_15: 542268-554251 Phaseolus vulgaris
Phvul.L008443 10.0kb upstream 10.0kb upstream 10000 false scaffold_15: 542268-552267 Phaseolus vulgaris
Phvul.L008443 10.0kb downstream 10.0kb downstream 11984 true scaffold_15: 552268-564251 Phaseolus vulgaris
Phvul.L008443 10.0kb downstream 10.0kb downstream 10000 false scaffold_15: 554252-564251 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041156 5273 Angiosperm View MSA
122304929 5265 Fabidae View MSA
124062400 5270 Rosid View MSA
123740758 5271 Pentapetalae View MSA
122790523 5272 Eudicot View MSA
121349324 5274 Embryophyte View MSA
123423889 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.0171 0.0 134.461 High High
cufflinks 28.6172 0.0 88.1755    
cufflinks 24.0896 0.0 138.99    
cufflinks 44.2957 0.0 129.284 High High
cufflinks 30.6321 0.0 179.975    
cufflinks 23.1829 0.0 129.639   Low
cufflinks 27.2648 0.0 146.061    
cufflinks 28.7466 0.0 88.1802 High  
cufflinks 27.3024 0.0 146.508    
cufflinks 21.9519 0.0 141.707   Low
cufflinks 34.4715 0.0 185.05 High  

0 Strain