Gene : Phvul.011G062400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  644
Name:  ? Phvul.011G062400 Secondary Identifier:  ? PAC:37155699
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7511 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G062400 0.5kb upstream 0.5kb upstream 2331 true Chr11: 5589308-5591638 Phaseolus vulgaris
Phvul.011G062400 0.5kb upstream 0.5kb upstream 500 false Chr11: 5589308-5589807 Phaseolus vulgaris
Phvul.011G062400 0.5kb downstream 0.5kb downstream 2331 true Chr11: 5589808-5592138 Phaseolus vulgaris
Phvul.011G062400 0.5kb downstream 0.5kb downstream 500 false Chr11: 5591639-5592138 Phaseolus vulgaris
Phvul.011G062400 1.0kb upstream 1.0kb upstream 2831 true Chr11: 5588808-5591638 Phaseolus vulgaris
Phvul.011G062400 1.0kb upstream 1.0kb upstream 1000 false Chr11: 5588808-5589807 Phaseolus vulgaris
Phvul.011G062400 1.0kb downstream 1.0kb downstream 2831 true Chr11: 5589808-5592638 Phaseolus vulgaris
Phvul.011G062400 1.0kb downstream 1.0kb downstream 1000 false Chr11: 5591639-5592638 Phaseolus vulgaris
Phvul.011G062400 2.0kb upstream 2.0kb upstream 3831 true Chr11: 5587808-5591638 Phaseolus vulgaris
Phvul.011G062400 2.0kb upstream 2.0kb upstream 2000 false Chr11: 5587808-5589807 Phaseolus vulgaris
Phvul.011G062400 2.0kb downstream 2.0kb downstream 3831 true Chr11: 5589808-5593638 Phaseolus vulgaris
Phvul.011G062400 2.0kb downstream 2.0kb downstream 2000 false Chr11: 5591639-5593638 Phaseolus vulgaris
Phvul.011G062400 5.0kb upstream 5.0kb upstream 6831 true Chr11: 5584808-5591638 Phaseolus vulgaris
Phvul.011G062400 5.0kb upstream 5.0kb upstream 5000 false Chr11: 5584808-5589807 Phaseolus vulgaris
Phvul.011G062400 5.0kb downstream 5.0kb downstream 6831 true Chr11: 5589808-5596638 Phaseolus vulgaris
Phvul.011G062400 5.0kb downstream 5.0kb downstream 5000 false Chr11: 5591639-5596638 Phaseolus vulgaris
Phvul.011G062400 10.0kb upstream 10.0kb upstream 11831 true Chr11: 5579808-5591638 Phaseolus vulgaris
Phvul.011G062400 10.0kb upstream 10.0kb upstream 10000 false Chr11: 5579808-5589807 Phaseolus vulgaris
Phvul.011G062400 10.0kb downstream 10.0kb downstream 11831 true Chr11: 5589808-5601638 Phaseolus vulgaris
Phvul.011G062400 10.0kb downstream 10.0kb downstream 10000 false Chr11: 5591639-5601638 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312857 5265 Fabidae View MSA
124073026 5270 Rosid View MSA
123745848 5271 Pentapetalae View MSA
122795555 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.1742 0.0 47.0673    
cufflinks 10.6955 0.0 28.4552    
cufflinks 4.62447 0.0 13.3267   Low
cufflinks 15.2932 0.0 39.7594    
cufflinks 22.2552 0.0 57.5292    
cufflinks 5.79686 0.0 16.2638   Low
cufflinks 108.27 0.0 313.022 High High
cufflinks 57.5104 0.0 154.216 High  
cufflinks 11.3341 0.0 29.9309    
cufflinks 241.196 0.0 786.626 High High
cufflinks 13.6123 0.0 35.5372    

0 Strain