Gene : Phvul.011G064600 P. vulgaris v2.1
Defline:  (1 of 3) PTHR24128:SF14 - E3 UBIQUITIN-PROTEIN LIGASE XBAT31-RELATED Genomic Order:  666
Name:  ? Phvul.011G064600 Secondary Identifier:  ? PAC:37157028
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G064600 0.5kb upstream 0.5kb upstream 4047 true Chr11: 5774638-5778684 Phaseolus vulgaris
Phvul.011G064600 0.5kb upstream 0.5kb upstream 500 false Chr11: 5778185-5778684 Phaseolus vulgaris
Phvul.011G064600 0.5kb downstream 0.5kb downstream 4047 true Chr11: 5774138-5778184 Phaseolus vulgaris
Phvul.011G064600 0.5kb downstream 0.5kb downstream 500 false Chr11: 5774138-5774637 Phaseolus vulgaris
Phvul.011G064600 1.0kb upstream 1.0kb upstream 4547 true Chr11: 5774638-5779184 Phaseolus vulgaris
Phvul.011G064600 1.0kb upstream 1.0kb upstream 1000 false Chr11: 5778185-5779184 Phaseolus vulgaris
Phvul.011G064600 1.0kb downstream 1.0kb downstream 4547 true Chr11: 5773638-5778184 Phaseolus vulgaris
Phvul.011G064600 1.0kb downstream 1.0kb downstream 1000 false Chr11: 5773638-5774637 Phaseolus vulgaris
Phvul.011G064600 2.0kb upstream 2.0kb upstream 5547 true Chr11: 5774638-5780184 Phaseolus vulgaris
Phvul.011G064600 2.0kb upstream 2.0kb upstream 2000 false Chr11: 5778185-5780184 Phaseolus vulgaris
Phvul.011G064600 2.0kb downstream 2.0kb downstream 5547 true Chr11: 5772638-5778184 Phaseolus vulgaris
Phvul.011G064600 2.0kb downstream 2.0kb downstream 2000 false Chr11: 5772638-5774637 Phaseolus vulgaris
Phvul.011G064600 5.0kb upstream 5.0kb upstream 8547 true Chr11: 5774638-5783184 Phaseolus vulgaris
Phvul.011G064600 5.0kb upstream 5.0kb upstream 5000 false Chr11: 5778185-5783184 Phaseolus vulgaris
Phvul.011G064600 5.0kb downstream 5.0kb downstream 8547 true Chr11: 5769638-5778184 Phaseolus vulgaris
Phvul.011G064600 5.0kb downstream 5.0kb downstream 5000 false Chr11: 5769638-5774637 Phaseolus vulgaris
Phvul.011G064600 10.0kb upstream 10.0kb upstream 13547 true Chr11: 5774638-5788184 Phaseolus vulgaris
Phvul.011G064600 10.0kb upstream 10.0kb upstream 10000 false Chr11: 5778185-5788184 Phaseolus vulgaris
Phvul.011G064600 10.0kb downstream 10.0kb downstream 13547 true Chr11: 5764638-5778184 Phaseolus vulgaris
Phvul.011G064600 10.0kb downstream 10.0kb downstream 10000 false Chr11: 5764638-5774637 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310561 5265 Fabidae View MSA
124067649 5270 Rosid View MSA
123746800 5271 Pentapetalae View MSA
122791790 5272 Eudicot View MSA
122045782 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121344984 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.29305 0.0 16.9536    
cufflinks 5.08429 0.0 13.9223    
cufflinks 5.58321 0.0 15.1471    
cufflinks 9.10167 0.0 24.0043    
cufflinks 18.6253 0.0 48.1638   High
cufflinks 4.52103 0.0 12.4968    
cufflinks 4.46875 0.0 12.3408    
cufflinks 3.99217 0.0 11.1279   Low
cufflinks 7.81101 0.0 20.6667    
cufflinks 15.1461 0.0 39.1607   High
cufflinks 20.1695 0.0 52.2303   High

0 Strain