Gene : Phvul.L004901 P. vulgaris v2.1
Defline:  (1 of 1) 3.7.1.9 - 2-hydroxymuconate-6-semialdehyde hydrolase / 2-hydroxymuconate-semialdehyde hydrolase Genomic Order:  5
Name:  ? Phvul.L004901 Secondary Identifier:  ? PAC:37163947
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L004901 0.5kb upstream 0.5kb upstream 5125 true scaffold_14: 157940-163064 Phaseolus vulgaris
Phvul.L004901 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 162565-163064 Phaseolus vulgaris
Phvul.L004901 0.5kb downstream 0.5kb downstream 5125 true scaffold_14: 157440-162564 Phaseolus vulgaris
Phvul.L004901 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 157440-157939 Phaseolus vulgaris
Phvul.L004901 1.0kb upstream 1.0kb upstream 5625 true scaffold_14: 157940-163564 Phaseolus vulgaris
Phvul.L004901 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 162565-163564 Phaseolus vulgaris
Phvul.L004901 1.0kb downstream 1.0kb downstream 5625 true scaffold_14: 156940-162564 Phaseolus vulgaris
Phvul.L004901 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 156940-157939 Phaseolus vulgaris
Phvul.L004901 2.0kb upstream 2.0kb upstream 6625 true scaffold_14: 157940-164564 Phaseolus vulgaris
Phvul.L004901 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 162565-164564 Phaseolus vulgaris
Phvul.L004901 2.0kb downstream 2.0kb downstream 6625 true scaffold_14: 155940-162564 Phaseolus vulgaris
Phvul.L004901 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 155940-157939 Phaseolus vulgaris
Phvul.L004901 5.0kb upstream 5.0kb upstream 9625 true scaffold_14: 157940-167564 Phaseolus vulgaris
Phvul.L004901 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 162565-167564 Phaseolus vulgaris
Phvul.L004901 5.0kb downstream 5.0kb downstream 9625 true scaffold_14: 152940-162564 Phaseolus vulgaris
Phvul.L004901 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 152940-157939 Phaseolus vulgaris
Phvul.L004901 10.0kb upstream 10.0kb upstream 14625 true scaffold_14: 157940-172564 Phaseolus vulgaris
Phvul.L004901 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 162565-172564 Phaseolus vulgaris
Phvul.L004901 10.0kb downstream 10.0kb downstream 14625 true scaffold_14: 147940-162564 Phaseolus vulgaris
Phvul.L004901 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 147940-157939 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041325 5273 Angiosperm View MSA
122304001 5265 Fabidae View MSA
124067777 5270 Rosid View MSA
123748154 5271 Pentapetalae View MSA
122796674 5272 Eudicot View MSA
121349939 5274 Embryophyte View MSA
123428460 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.4495 0.0 10.2272    
cufflinks 2.87005 0.0 8.66853    
cufflinks 9.76433 0.0 26.1256   High
cufflinks 8.16959 0.0 22.2394    
cufflinks 5.18609 0.0 14.7066    
cufflinks 10.7394 0.0 28.5762   High
cufflinks 3.59726 0.0 10.5732    
cufflinks 2.18048 0.0 6.78626    
cufflinks 1.60068 0.0 5.16339   Low
cufflinks 0.837201 0.0 2.91112   Low
cufflinks 9.73246 0.0 26.1426   High

0 Strain