Gene : Phvul.L005601 P. vulgaris v2.1
Defline:  (1 of 11) KOG3399 - Predicted Yippee-type zinc-binding protein Genomic Order:  12
Name:  ? Phvul.L005601 Secondary Identifier:  ? PAC:37163914
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L005601 0.5kb upstream 0.5kb upstream 2480 true scaffold_14: 462779-465258 Phaseolus vulgaris
Phvul.L005601 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 462779-463278 Phaseolus vulgaris
Phvul.L005601 0.5kb downstream 0.5kb downstream 2480 true scaffold_14: 463279-465758 Phaseolus vulgaris
Phvul.L005601 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 465259-465758 Phaseolus vulgaris
Phvul.L005601 1.0kb upstream 1.0kb upstream 2980 true scaffold_14: 462279-465258 Phaseolus vulgaris
Phvul.L005601 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 462279-463278 Phaseolus vulgaris
Phvul.L005601 1.0kb downstream 1.0kb downstream 2980 true scaffold_14: 463279-466258 Phaseolus vulgaris
Phvul.L005601 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 465259-466258 Phaseolus vulgaris
Phvul.L005601 2.0kb upstream 2.0kb upstream 3980 true scaffold_14: 461279-465258 Phaseolus vulgaris
Phvul.L005601 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 461279-463278 Phaseolus vulgaris
Phvul.L005601 2.0kb downstream 2.0kb downstream 3980 true scaffold_14: 463279-467258 Phaseolus vulgaris
Phvul.L005601 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 465259-467258 Phaseolus vulgaris
Phvul.L005601 5.0kb upstream 5.0kb upstream 6980 true scaffold_14: 458279-465258 Phaseolus vulgaris
Phvul.L005601 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 458279-463278 Phaseolus vulgaris
Phvul.L005601 5.0kb downstream 5.0kb downstream 6980 true scaffold_14: 463279-470258 Phaseolus vulgaris
Phvul.L005601 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 465259-470258 Phaseolus vulgaris
Phvul.L005601 10.0kb upstream 10.0kb upstream 11980 true scaffold_14: 453279-465258 Phaseolus vulgaris
Phvul.L005601 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 453279-463278 Phaseolus vulgaris
Phvul.L005601 10.0kb downstream 10.0kb downstream 11980 true scaffold_14: 463279-475258 Phaseolus vulgaris
Phvul.L005601 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 465259-475258 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041337 5273 Angiosperm View MSA
122254387 5265 Fabidae View MSA
124072414 5270 Rosid View MSA
123752615 5271 Pentapetalae View MSA
122791285 5272 Eudicot View MSA
123428914 5275 Viridiplantae View MSA
121343957 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.33695 0.0 8.07688    
cufflinks 4.88911 0.0 15.5187    
cufflinks 4.02619 0.0 12.9868    
cufflinks 10.3203 0.0 30.4427   High
cufflinks 6.77649 0.0 20.9178    
cufflinks 0.513193 0.0 2.02024 Low Low
cufflinks 2.32836 0.0 8.02456    
cufflinks 3.12168 0.0 10.338    
cufflinks 4.63048 0.0 14.7932    
cufflinks 4.13426 0.0 13.4195    
cufflinks 7.95568 0.0 24.0044    

0 Strain