Gene : Phvul.L001644 P. vulgaris v2.1
Defline:  (1 of 79) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1
Name:  ? Phvul.L001644 Secondary Identifier:  ? PAC:37174264
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L001644 0.5kb upstream 0.5kb upstream 4102 true scaffold_16: 27488-31589 Phaseolus vulgaris
Phvul.L001644 0.5kb upstream 0.5kb upstream 500 false scaffold_16: 27488-27987 Phaseolus vulgaris
Phvul.L001644 0.5kb downstream 0.5kb downstream 4102 true scaffold_16: 27988-32089 Phaseolus vulgaris
Phvul.L001644 0.5kb downstream 0.5kb downstream 500 false scaffold_16: 31590-32089 Phaseolus vulgaris
Phvul.L001644 1.0kb upstream 1.0kb upstream 4602 true scaffold_16: 26988-31589 Phaseolus vulgaris
Phvul.L001644 1.0kb upstream 1.0kb upstream 1000 false scaffold_16: 26988-27987 Phaseolus vulgaris
Phvul.L001644 1.0kb downstream 1.0kb downstream 4602 true scaffold_16: 27988-32589 Phaseolus vulgaris
Phvul.L001644 1.0kb downstream 1.0kb downstream 1000 false scaffold_16: 31590-32589 Phaseolus vulgaris
Phvul.L001644 2.0kb upstream 2.0kb upstream 5602 true scaffold_16: 25988-31589 Phaseolus vulgaris
Phvul.L001644 2.0kb upstream 2.0kb upstream 2000 false scaffold_16: 25988-27987 Phaseolus vulgaris
Phvul.L001644 2.0kb downstream 2.0kb downstream 5602 true scaffold_16: 27988-33589 Phaseolus vulgaris
Phvul.L001644 2.0kb downstream 2.0kb downstream 2000 false scaffold_16: 31590-33589 Phaseolus vulgaris
Phvul.L001644 5.0kb upstream 5.0kb upstream 8602 true scaffold_16: 22988-31589 Phaseolus vulgaris
Phvul.L001644 5.0kb upstream 5.0kb upstream 5000 false scaffold_16: 22988-27987 Phaseolus vulgaris
Phvul.L001644 5.0kb downstream 5.0kb downstream 8602 true scaffold_16: 27988-36589 Phaseolus vulgaris
Phvul.L001644 5.0kb downstream 5.0kb downstream 5000 false scaffold_16: 31590-36589 Phaseolus vulgaris
Phvul.L001644 10.0kb upstream 10.0kb upstream 13602 true scaffold_16: 17988-31589 Phaseolus vulgaris
Phvul.L001644 10.0kb upstream 10.0kb upstream 10000 false scaffold_16: 17988-27987 Phaseolus vulgaris
Phvul.L001644 10.0kb downstream 10.0kb downstream 13602 true scaffold_16: 27988-41589 Phaseolus vulgaris
Phvul.L001644 10.0kb downstream 10.0kb downstream 10000 false scaffold_16: 31590-41589 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026493 5273 Angiosperm View MSA
122300560 5265 Fabidae View MSA
124068457 5270 Rosid View MSA
123738065 5271 Pentapetalae View MSA
122785849 5272 Eudicot View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.815131 0.0 2.66223    
cufflinks 1.22985 0.0 3.83814   High
cufflinks 0.846785 0.0 2.74916    
cufflinks 0.812937 0.0 2.67505    
cufflinks 1.07245 0.0 3.41348    
cufflinks 0.878064 0.0 2.84536    
cufflinks 0.918995 0.0 2.96498    
cufflinks 1.34521 0.0 4.14255   High
cufflinks 0.921342 0.0 2.98077    
cufflinks 1.051 0.0 3.33726    
cufflinks 0.694217 0.0 2.32152   Low

0 Strain