Gene : Phvul.011G058800 P. vulgaris v2.1
Defline:  (1 of 3) PTHR14155:SF75 - E3 UBIQUITIN LIGASE BIG BROTHER Genomic Order:  608
Name:  ? Phvul.011G058800 Secondary Identifier:  ? PAC:37155041
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G058800 0.5kb upstream 0.5kb upstream 5246 true Chr11: 5255369-5260614 Phaseolus vulgaris
Phvul.011G058800 0.5kb upstream 0.5kb upstream 500 false Chr11: 5255369-5255868 Phaseolus vulgaris
Phvul.011G058800 0.5kb downstream 0.5kb downstream 5246 true Chr11: 5255869-5261114 Phaseolus vulgaris
Phvul.011G058800 0.5kb downstream 0.5kb downstream 500 false Chr11: 5260615-5261114 Phaseolus vulgaris
Phvul.011G058800 1.0kb upstream 1.0kb upstream 5746 true Chr11: 5254869-5260614 Phaseolus vulgaris
Phvul.011G058800 1.0kb upstream 1.0kb upstream 1000 false Chr11: 5254869-5255868 Phaseolus vulgaris
Phvul.011G058800 1.0kb downstream 1.0kb downstream 5746 true Chr11: 5255869-5261614 Phaseolus vulgaris
Phvul.011G058800 1.0kb downstream 1.0kb downstream 1000 false Chr11: 5260615-5261614 Phaseolus vulgaris
Phvul.011G058800 2.0kb upstream 2.0kb upstream 6746 true Chr11: 5253869-5260614 Phaseolus vulgaris
Phvul.011G058800 2.0kb upstream 2.0kb upstream 2000 false Chr11: 5253869-5255868 Phaseolus vulgaris
Phvul.011G058800 2.0kb downstream 2.0kb downstream 6746 true Chr11: 5255869-5262614 Phaseolus vulgaris
Phvul.011G058800 2.0kb downstream 2.0kb downstream 2000 false Chr11: 5260615-5262614 Phaseolus vulgaris
Phvul.011G058800 5.0kb upstream 5.0kb upstream 9746 true Chr11: 5250869-5260614 Phaseolus vulgaris
Phvul.011G058800 5.0kb upstream 5.0kb upstream 5000 false Chr11: 5250869-5255868 Phaseolus vulgaris
Phvul.011G058800 5.0kb downstream 5.0kb downstream 9746 true Chr11: 5255869-5265614 Phaseolus vulgaris
Phvul.011G058800 5.0kb downstream 5.0kb downstream 5000 false Chr11: 5260615-5265614 Phaseolus vulgaris
Phvul.011G058800 10.0kb upstream 10.0kb upstream 14746 true Chr11: 5245869-5260614 Phaseolus vulgaris
Phvul.011G058800 10.0kb upstream 10.0kb upstream 10000 false Chr11: 5245869-5255868 Phaseolus vulgaris
Phvul.011G058800 10.0kb downstream 10.0kb downstream 14746 true Chr11: 5255869-5270614 Phaseolus vulgaris
Phvul.011G058800 10.0kb downstream 10.0kb downstream 10000 false Chr11: 5260615-5270614 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302480 5265 Fabidae View MSA
124069902 5270 Rosid View MSA
123752046 5271 Pentapetalae View MSA
122792578 5272 Eudicot View MSA
122048358 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121310941 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.52396 0.0 26.1513    
cufflinks 10.078 0.0 27.5162    
cufflinks 8.04783 0.0 22.3504   Low
cufflinks 14.3299 0.0 38.321   High
cufflinks 8.84566 0.0 24.6275   Low
cufflinks 9.43833 0.0 25.8946    
cufflinks 10.8885 0.0 29.5066    
cufflinks 11.0144 0.0 29.6623    
cufflinks 10.7739 0.0 29.2787    
cufflinks 11.2942 0.0 30.6014    
cufflinks 12.7479 0.0 34.3067   High

0 Strain