Gene : Phvul.011G050300 P. vulgaris v2.1
Defline:  (1 of 1) K08873 - PI-3-kinase-related kinase SMG-1 (SMG1) Genomic Order:  520
Name:  ? Phvul.011G050300 Secondary Identifier:  ? PAC:37154840
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G050300 0.5kb upstream 0.5kb upstream 17049 true Chr11: 4464026-4481074 Phaseolus vulgaris
Phvul.011G050300 0.5kb upstream 0.5kb upstream 500 false Chr11: 4480575-4481074 Phaseolus vulgaris
Phvul.011G050300 0.5kb downstream 0.5kb downstream 17049 true Chr11: 4463526-4480574 Phaseolus vulgaris
Phvul.011G050300 0.5kb downstream 0.5kb downstream 500 false Chr11: 4463526-4464025 Phaseolus vulgaris
Phvul.011G050300 1.0kb upstream 1.0kb upstream 17549 true Chr11: 4464026-4481574 Phaseolus vulgaris
Phvul.011G050300 1.0kb upstream 1.0kb upstream 1000 false Chr11: 4480575-4481574 Phaseolus vulgaris
Phvul.011G050300 1.0kb downstream 1.0kb downstream 17549 true Chr11: 4463026-4480574 Phaseolus vulgaris
Phvul.011G050300 1.0kb downstream 1.0kb downstream 1000 false Chr11: 4463026-4464025 Phaseolus vulgaris
Phvul.011G050300 2.0kb upstream 2.0kb upstream 18549 true Chr11: 4464026-4482574 Phaseolus vulgaris
Phvul.011G050300 2.0kb upstream 2.0kb upstream 2000 false Chr11: 4480575-4482574 Phaseolus vulgaris
Phvul.011G050300 2.0kb downstream 2.0kb downstream 18549 true Chr11: 4462026-4480574 Phaseolus vulgaris
Phvul.011G050300 2.0kb downstream 2.0kb downstream 2000 false Chr11: 4462026-4464025 Phaseolus vulgaris
Phvul.011G050300 5.0kb upstream 5.0kb upstream 21549 true Chr11: 4464026-4485574 Phaseolus vulgaris
Phvul.011G050300 5.0kb upstream 5.0kb upstream 5000 false Chr11: 4480575-4485574 Phaseolus vulgaris
Phvul.011G050300 5.0kb downstream 5.0kb downstream 21549 true Chr11: 4459026-4480574 Phaseolus vulgaris
Phvul.011G050300 5.0kb downstream 5.0kb downstream 5000 false Chr11: 4459026-4464025 Phaseolus vulgaris
Phvul.011G050300 10.0kb upstream 10.0kb upstream 26549 true Chr11: 4464026-4490574 Phaseolus vulgaris
Phvul.011G050300 10.0kb upstream 10.0kb upstream 10000 false Chr11: 4480575-4490574 Phaseolus vulgaris
Phvul.011G050300 10.0kb downstream 10.0kb downstream 26549 true Chr11: 4454026-4480574 Phaseolus vulgaris
Phvul.011G050300 10.0kb downstream 10.0kb downstream 10000 false Chr11: 4454026-4464025 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300926 5265 Fabidae View MSA
124050345 5270 Rosid View MSA
123740194 5271 Pentapetalae View MSA
122789167 5272 Eudicot View MSA
122046807 5273 Angiosperm View MSA
121348670 5274 Embryophyte View MSA
123425696 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.471742 0.0 1.82852   Low
cufflinks 1.65732 0.0 5.62903    
cufflinks 4.46728 0.0 14.3078    
cufflinks 0.747362 0.0 2.61838   Low
cufflinks 3.08074 0.0 9.84853    
cufflinks 5.19276 0.0 16.6965    
cufflinks 5.34438 0.0 17.2023    
cufflinks 4.66767 0.0 14.9471    
cufflinks 4.12251 0.0 13.1102    
cufflinks 5.45687 0.0 17.6118    
cufflinks 1.79863 0.0 6.1057    

0 Strain