Gene : Phvul.011G045100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR13068:SF4 - TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN Genomic Order:  467
Name:  ? Phvul.011G045100 Secondary Identifier:  ? PAC:37155343
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G045100 0.5kb upstream 0.5kb upstream 4316 true Chr11: 4059672-4063987 Phaseolus vulgaris
Phvul.011G045100 0.5kb upstream 0.5kb upstream 500 false Chr11: 4059672-4060171 Phaseolus vulgaris
Phvul.011G045100 0.5kb downstream 0.5kb downstream 4316 true Chr11: 4060172-4064487 Phaseolus vulgaris
Phvul.011G045100 0.5kb downstream 0.5kb downstream 500 false Chr11: 4063988-4064487 Phaseolus vulgaris
Phvul.011G045100 1.0kb upstream 1.0kb upstream 4816 true Chr11: 4059172-4063987 Phaseolus vulgaris
Phvul.011G045100 1.0kb upstream 1.0kb upstream 1000 false Chr11: 4059172-4060171 Phaseolus vulgaris
Phvul.011G045100 1.0kb downstream 1.0kb downstream 4816 true Chr11: 4060172-4064987 Phaseolus vulgaris
Phvul.011G045100 1.0kb downstream 1.0kb downstream 1000 false Chr11: 4063988-4064987 Phaseolus vulgaris
Phvul.011G045100 2.0kb upstream 2.0kb upstream 5816 true Chr11: 4058172-4063987 Phaseolus vulgaris
Phvul.011G045100 2.0kb upstream 2.0kb upstream 2000 false Chr11: 4058172-4060171 Phaseolus vulgaris
Phvul.011G045100 2.0kb downstream 2.0kb downstream 5816 true Chr11: 4060172-4065987 Phaseolus vulgaris
Phvul.011G045100 2.0kb downstream 2.0kb downstream 2000 false Chr11: 4063988-4065987 Phaseolus vulgaris
Phvul.011G045100 5.0kb upstream 5.0kb upstream 8816 true Chr11: 4055172-4063987 Phaseolus vulgaris
Phvul.011G045100 5.0kb upstream 5.0kb upstream 5000 false Chr11: 4055172-4060171 Phaseolus vulgaris
Phvul.011G045100 5.0kb downstream 5.0kb downstream 8816 true Chr11: 4060172-4068987 Phaseolus vulgaris
Phvul.011G045100 5.0kb downstream 5.0kb downstream 5000 false Chr11: 4063988-4068987 Phaseolus vulgaris
Phvul.011G045100 10.0kb upstream 10.0kb upstream 13816 true Chr11: 4050172-4063987 Phaseolus vulgaris
Phvul.011G045100 10.0kb upstream 10.0kb upstream 10000 false Chr11: 4050172-4060171 Phaseolus vulgaris
Phvul.011G045100 10.0kb downstream 10.0kb downstream 13816 true Chr11: 4060172-4073987 Phaseolus vulgaris
Phvul.011G045100 10.0kb downstream 10.0kb downstream 10000 false Chr11: 4063988-4073987 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301320 5265 Fabidae View MSA
124068588 5270 Rosid View MSA
123748768 5271 Pentapetalae View MSA
122785752 5272 Eudicot View MSA
122044224 5273 Angiosperm View MSA
121347901 5274 Embryophyte View MSA
123427998 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.7949 0.0 9.50841    
cufflinks 3.74958 0.0 16.0827    
cufflinks 11.4431 0.0 49.5053   High
cufflinks 2.16385 0.0 11.2233    
cufflinks 4.14747 0.0 14.6782    
cufflinks 6.18853 0.0 22.9277   High
cufflinks 1.89526 0.0 8.93849    
cufflinks 1.95904 0.0 8.61873    
cufflinks 1.56777 0.0 7.14575   Low
cufflinks 5.81611 0.0 28.0189    
cufflinks 2.84235 0.0 11.3054    

0 Strain