Gene : Phvul.011G034500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12385:SF44 - PLASMA-MEMBRANE CHOLINE TRANSPORTER FAMILY PROTEIN Genomic Order:  361
Name:  ? Phvul.011G034500 Secondary Identifier:  ? PAC:37155498
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G034500 0.5kb upstream 0.5kb upstream 5123 true Chr11: 3168563-3173685 Phaseolus vulgaris
Phvul.011G034500 0.5kb upstream 0.5kb upstream 500 false Chr11: 3168563-3169062 Phaseolus vulgaris
Phvul.011G034500 0.5kb downstream 0.5kb downstream 5123 true Chr11: 3169063-3174185 Phaseolus vulgaris
Phvul.011G034500 0.5kb downstream 0.5kb downstream 500 false Chr11: 3173686-3174185 Phaseolus vulgaris
Phvul.011G034500 1.0kb upstream 1.0kb upstream 5623 true Chr11: 3168063-3173685 Phaseolus vulgaris
Phvul.011G034500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 3168063-3169062 Phaseolus vulgaris
Phvul.011G034500 1.0kb downstream 1.0kb downstream 5623 true Chr11: 3169063-3174685 Phaseolus vulgaris
Phvul.011G034500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 3173686-3174685 Phaseolus vulgaris
Phvul.011G034500 2.0kb upstream 2.0kb upstream 6623 true Chr11: 3167063-3173685 Phaseolus vulgaris
Phvul.011G034500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 3167063-3169062 Phaseolus vulgaris
Phvul.011G034500 2.0kb downstream 2.0kb downstream 6623 true Chr11: 3169063-3175685 Phaseolus vulgaris
Phvul.011G034500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 3173686-3175685 Phaseolus vulgaris
Phvul.011G034500 5.0kb upstream 5.0kb upstream 9623 true Chr11: 3164063-3173685 Phaseolus vulgaris
Phvul.011G034500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 3164063-3169062 Phaseolus vulgaris
Phvul.011G034500 5.0kb downstream 5.0kb downstream 9623 true Chr11: 3169063-3178685 Phaseolus vulgaris
Phvul.011G034500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 3173686-3178685 Phaseolus vulgaris
Phvul.011G034500 10.0kb upstream 10.0kb upstream 14623 true Chr11: 3159063-3173685 Phaseolus vulgaris
Phvul.011G034500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 3159063-3169062 Phaseolus vulgaris
Phvul.011G034500 10.0kb downstream 10.0kb downstream 14623 true Chr11: 3169063-3183685 Phaseolus vulgaris
Phvul.011G034500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 3173686-3183685 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302050 5265 Fabidae View MSA
124063847 5270 Rosid View MSA
123737171 5271 Pentapetalae View MSA
122792256 5272 Eudicot View MSA
122043593 5273 Angiosperm View MSA
121347298 5274 Embryophyte View MSA
123428325 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.1679 0.0 67.6391    
cufflinks 22.2123 0.0 57.4928    
cufflinks 22.8054 0.0 59.0116    
cufflinks 33.7676 0.0 87.5503   High
cufflinks 25.6548 0.0 66.3137    
cufflinks 19.6887 0.0 51.1091    
cufflinks 17.3217 0.0 45.1696   Low
cufflinks 14.2174 0.0 37.4464   Low
cufflinks 30.519 0.0 78.9158 High High
cufflinks 22.2053 0.0 57.4521    
cufflinks 24.4177 0.0 63.1347    

0 Strain