Gene : Phvul.011G039300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31576:SF2 - TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B Genomic Order:  409
Name:  ? Phvul.011G039300 Secondary Identifier:  ? PAC:37156827
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G039300 0.5kb upstream 0.5kb upstream 4261 true Chr11: 3575352-3579612 Phaseolus vulgaris
Phvul.011G039300 0.5kb upstream 0.5kb upstream 500 false Chr11: 3575352-3575851 Phaseolus vulgaris
Phvul.011G039300 0.5kb downstream 0.5kb downstream 4261 true Chr11: 3575852-3580112 Phaseolus vulgaris
Phvul.011G039300 0.5kb downstream 0.5kb downstream 500 false Chr11: 3579613-3580112 Phaseolus vulgaris
Phvul.011G039300 1.0kb upstream 1.0kb upstream 4761 true Chr11: 3574852-3579612 Phaseolus vulgaris
Phvul.011G039300 1.0kb upstream 1.0kb upstream 1000 false Chr11: 3574852-3575851 Phaseolus vulgaris
Phvul.011G039300 1.0kb downstream 1.0kb downstream 4761 true Chr11: 3575852-3580612 Phaseolus vulgaris
Phvul.011G039300 1.0kb downstream 1.0kb downstream 1000 false Chr11: 3579613-3580612 Phaseolus vulgaris
Phvul.011G039300 2.0kb upstream 2.0kb upstream 5761 true Chr11: 3573852-3579612 Phaseolus vulgaris
Phvul.011G039300 2.0kb upstream 2.0kb upstream 2000 false Chr11: 3573852-3575851 Phaseolus vulgaris
Phvul.011G039300 2.0kb downstream 2.0kb downstream 5761 true Chr11: 3575852-3581612 Phaseolus vulgaris
Phvul.011G039300 2.0kb downstream 2.0kb downstream 2000 false Chr11: 3579613-3581612 Phaseolus vulgaris
Phvul.011G039300 5.0kb upstream 5.0kb upstream 8761 true Chr11: 3570852-3579612 Phaseolus vulgaris
Phvul.011G039300 5.0kb upstream 5.0kb upstream 5000 false Chr11: 3570852-3575851 Phaseolus vulgaris
Phvul.011G039300 5.0kb downstream 5.0kb downstream 8761 true Chr11: 3575852-3584612 Phaseolus vulgaris
Phvul.011G039300 5.0kb downstream 5.0kb downstream 5000 false Chr11: 3579613-3584612 Phaseolus vulgaris
Phvul.011G039300 10.0kb upstream 10.0kb upstream 13761 true Chr11: 3565852-3579612 Phaseolus vulgaris
Phvul.011G039300 10.0kb upstream 10.0kb upstream 10000 false Chr11: 3565852-3575851 Phaseolus vulgaris
Phvul.011G039300 10.0kb downstream 10.0kb downstream 13761 true Chr11: 3575852-3589612 Phaseolus vulgaris
Phvul.011G039300 10.0kb downstream 10.0kb downstream 10000 false Chr11: 3579613-3589612 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306407 5265 Fabidae View MSA
124065937 5270 Rosid View MSA
123742102 5271 Pentapetalae View MSA
122796533 5272 Eudicot View MSA
122050673 5273 Angiosperm View MSA
121345414 5274 Embryophyte View MSA
123427215 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.56433 0.0 10.355    
cufflinks 4.39704 0.0 12.5171    
cufflinks 8.63335 0.0 23.0943   High
cufflinks 2.9869 0.0 8.96842   Low
cufflinks 3.38413 0.0 10.0033    
cufflinks 5.62047 0.0 15.6201    
cufflinks 3.53387 0.0 10.3049    
cufflinks 4.05646 0.0 11.5929    
cufflinks 4.09124 0.0 11.7782    
cufflinks 7.02198 0.0 19.1735   High
cufflinks 3.22758 0.0 9.56805    

0 Strain