Gene : Phvul.011G039700 P. vulgaris v2.1
Defline:  (1 of 3) PTHR11877//PTHR11877:SF25 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE // SUBFAMILY NOT NAMED Genomic Order:  413
Name:  ? Phvul.011G039700 Secondary Identifier:  ? PAC:37155322
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G039700 0.5kb upstream 0.5kb upstream 3530 true Chr11: 3611926-3615455 Phaseolus vulgaris
Phvul.011G039700 0.5kb upstream 0.5kb upstream 500 false Chr11: 3614956-3615455 Phaseolus vulgaris
Phvul.011G039700 0.5kb downstream 0.5kb downstream 3530 true Chr11: 3611426-3614955 Phaseolus vulgaris
Phvul.011G039700 0.5kb downstream 0.5kb downstream 500 false Chr11: 3611426-3611925 Phaseolus vulgaris
Phvul.011G039700 1.0kb upstream 1.0kb upstream 4030 true Chr11: 3611926-3615955 Phaseolus vulgaris
Phvul.011G039700 1.0kb upstream 1.0kb upstream 1000 false Chr11: 3614956-3615955 Phaseolus vulgaris
Phvul.011G039700 1.0kb downstream 1.0kb downstream 4030 true Chr11: 3610926-3614955 Phaseolus vulgaris
Phvul.011G039700 1.0kb downstream 1.0kb downstream 1000 false Chr11: 3610926-3611925 Phaseolus vulgaris
Phvul.011G039700 2.0kb upstream 2.0kb upstream 5030 true Chr11: 3611926-3616955 Phaseolus vulgaris
Phvul.011G039700 2.0kb upstream 2.0kb upstream 2000 false Chr11: 3614956-3616955 Phaseolus vulgaris
Phvul.011G039700 2.0kb downstream 2.0kb downstream 5030 true Chr11: 3609926-3614955 Phaseolus vulgaris
Phvul.011G039700 2.0kb downstream 2.0kb downstream 2000 false Chr11: 3609926-3611925 Phaseolus vulgaris
Phvul.011G039700 5.0kb upstream 5.0kb upstream 8030 true Chr11: 3611926-3619955 Phaseolus vulgaris
Phvul.011G039700 5.0kb upstream 5.0kb upstream 5000 false Chr11: 3614956-3619955 Phaseolus vulgaris
Phvul.011G039700 5.0kb downstream 5.0kb downstream 8030 true Chr11: 3606926-3614955 Phaseolus vulgaris
Phvul.011G039700 5.0kb downstream 5.0kb downstream 5000 false Chr11: 3606926-3611925 Phaseolus vulgaris
Phvul.011G039700 10.0kb upstream 10.0kb upstream 13030 true Chr11: 3611926-3624955 Phaseolus vulgaris
Phvul.011G039700 10.0kb upstream 10.0kb upstream 10000 false Chr11: 3614956-3624955 Phaseolus vulgaris
Phvul.011G039700 10.0kb downstream 10.0kb downstream 13030 true Chr11: 3601926-3614955 Phaseolus vulgaris
Phvul.011G039700 10.0kb downstream 10.0kb downstream 10000 false Chr11: 3601926-3611925 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300331 5265 Fabidae View MSA
124063959 5270 Rosid View MSA
123736714 5271 Pentapetalae View MSA
122788702 5272 Eudicot View MSA
122042999 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.018112 0.0 0.089763 Low Low
cufflinks 0.0336476 0.0 0.155984 Low Low
cufflinks 0.0609932 0.0 0.265837 Low  
cufflinks 0.0351699 0.0 0.163369 Low Low
cufflinks 0.12602 0.0 0.518639 Low  
cufflinks 0.0913532 0.0 0.383981 Low  
cufflinks 0.196645 0.0 0.77642 Low  
cufflinks 0.126605 0.0 0.516934 Low  
cufflinks 0.307724 0.0 1.17424 Low High
cufflinks 0.202621 0.0 0.801501 Low  
cufflinks 0.111599 0.0 0.463281 Low  

0 Strain