Gene : Phvul.011G025600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR34574:SF2 - EF-HAND CONTAINING PROTEIN-LIKE Genomic Order:  275
Name:  ? Phvul.011G025600 Secondary Identifier:  ? PAC:37155832
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G025600 0.5kb upstream 0.5kb upstream 4337 true Chr11: 2296524-2300860 Phaseolus vulgaris
Phvul.011G025600 0.5kb upstream 0.5kb upstream 500 false Chr11: 2296524-2297023 Phaseolus vulgaris
Phvul.011G025600 0.5kb downstream 0.5kb downstream 4337 true Chr11: 2297024-2301360 Phaseolus vulgaris
Phvul.011G025600 0.5kb downstream 0.5kb downstream 500 false Chr11: 2300861-2301360 Phaseolus vulgaris
Phvul.011G025600 1.0kb upstream 1.0kb upstream 4837 true Chr11: 2296024-2300860 Phaseolus vulgaris
Phvul.011G025600 1.0kb upstream 1.0kb upstream 1000 false Chr11: 2296024-2297023 Phaseolus vulgaris
Phvul.011G025600 1.0kb downstream 1.0kb downstream 4837 true Chr11: 2297024-2301860 Phaseolus vulgaris
Phvul.011G025600 1.0kb downstream 1.0kb downstream 1000 false Chr11: 2300861-2301860 Phaseolus vulgaris
Phvul.011G025600 2.0kb upstream 2.0kb upstream 5837 true Chr11: 2295024-2300860 Phaseolus vulgaris
Phvul.011G025600 2.0kb upstream 2.0kb upstream 2000 false Chr11: 2295024-2297023 Phaseolus vulgaris
Phvul.011G025600 2.0kb downstream 2.0kb downstream 5837 true Chr11: 2297024-2302860 Phaseolus vulgaris
Phvul.011G025600 2.0kb downstream 2.0kb downstream 2000 false Chr11: 2300861-2302860 Phaseolus vulgaris
Phvul.011G025600 5.0kb upstream 5.0kb upstream 8837 true Chr11: 2292024-2300860 Phaseolus vulgaris
Phvul.011G025600 5.0kb upstream 5.0kb upstream 5000 false Chr11: 2292024-2297023 Phaseolus vulgaris
Phvul.011G025600 5.0kb downstream 5.0kb downstream 8837 true Chr11: 2297024-2305860 Phaseolus vulgaris
Phvul.011G025600 5.0kb downstream 5.0kb downstream 5000 false Chr11: 2300861-2305860 Phaseolus vulgaris
Phvul.011G025600 10.0kb upstream 10.0kb upstream 13837 true Chr11: 2287024-2300860 Phaseolus vulgaris
Phvul.011G025600 10.0kb upstream 10.0kb upstream 10000 false Chr11: 2287024-2297023 Phaseolus vulgaris
Phvul.011G025600 10.0kb downstream 10.0kb downstream 13837 true Chr11: 2297024-2310860 Phaseolus vulgaris
Phvul.011G025600 10.0kb downstream 10.0kb downstream 10000 false Chr11: 2300861-2310860 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314356 5265 Fabidae View MSA
124062130 5270 Rosid View MSA
123739646 5271 Pentapetalae View MSA
122789381 5272 Eudicot View MSA
122043203 5273 Angiosperm View MSA
121346779 5274 Embryophyte View MSA
123380443 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.2457 0.0 96.9879 High High
cufflinks 7.0167 0.0 19.3855    
cufflinks 26.767 0.0 69.2246   High
cufflinks 20.2222 0.0 52.4817    
cufflinks 11.8941 0.0 31.6653    
cufflinks 8.57521 0.0 23.2508    
cufflinks 9.15503 0.0 24.6804    
cufflinks 2.1926 0.0 6.80418   Low
cufflinks 25.535 0.0 66.0099   High
cufflinks 4.5871 0.0 13.2267    
cufflinks 4.90535 0.0 14.0669    

0 Strain