Gene : Phvul.011G025500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR33101:SF6 - ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 Genomic Order:  274
Name:  ? Phvul.011G025500 Secondary Identifier:  ? PAC:37156040
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G025500 0.5kb upstream 0.5kb upstream 4268 true Chr11: 2290264-2294531 Phaseolus vulgaris
Phvul.011G025500 0.5kb upstream 0.5kb upstream 500 false Chr11: 2290264-2290763 Phaseolus vulgaris
Phvul.011G025500 0.5kb downstream 0.5kb downstream 4268 true Chr11: 2290764-2295031 Phaseolus vulgaris
Phvul.011G025500 0.5kb downstream 0.5kb downstream 500 false Chr11: 2294532-2295031 Phaseolus vulgaris
Phvul.011G025500 1.0kb upstream 1.0kb upstream 4768 true Chr11: 2289764-2294531 Phaseolus vulgaris
Phvul.011G025500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 2289764-2290763 Phaseolus vulgaris
Phvul.011G025500 1.0kb downstream 1.0kb downstream 4768 true Chr11: 2290764-2295531 Phaseolus vulgaris
Phvul.011G025500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 2294532-2295531 Phaseolus vulgaris
Phvul.011G025500 2.0kb upstream 2.0kb upstream 5768 true Chr11: 2288764-2294531 Phaseolus vulgaris
Phvul.011G025500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 2288764-2290763 Phaseolus vulgaris
Phvul.011G025500 2.0kb downstream 2.0kb downstream 5768 true Chr11: 2290764-2296531 Phaseolus vulgaris
Phvul.011G025500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 2294532-2296531 Phaseolus vulgaris
Phvul.011G025500 5.0kb upstream 5.0kb upstream 8768 true Chr11: 2285764-2294531 Phaseolus vulgaris
Phvul.011G025500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 2285764-2290763 Phaseolus vulgaris
Phvul.011G025500 5.0kb downstream 5.0kb downstream 8768 true Chr11: 2290764-2299531 Phaseolus vulgaris
Phvul.011G025500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 2294532-2299531 Phaseolus vulgaris
Phvul.011G025500 10.0kb upstream 10.0kb upstream 13768 true Chr11: 2280764-2294531 Phaseolus vulgaris
Phvul.011G025500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 2280764-2290763 Phaseolus vulgaris
Phvul.011G025500 10.0kb downstream 10.0kb downstream 13768 true Chr11: 2290764-2304531 Phaseolus vulgaris
Phvul.011G025500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 2294532-2304531 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300301 5265 Fabidae View MSA
124066170 5270 Rosid View MSA
123737704 5271 Pentapetalae View MSA
122792292 5272 Eudicot View MSA
122042177 5273 Angiosperm View MSA
121349126 5274 Embryophyte View MSA
123381182 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.09651 0.0 13.8954   Low
cufflinks 18.2387 0.0 47.213    
cufflinks 29.331 0.0 77.265   High
cufflinks 10.3075 0.0 26.8445    
cufflinks 13.6813 0.0 35.3814    
cufflinks 20.0109 0.0 51.8962   High
cufflinks 5.90659 0.0 15.8407   Low
cufflinks 6.93478 0.0 18.4078    
cufflinks 4.62988 0.0 12.7005   Low
cufflinks 12.6551 0.0 32.7604    
cufflinks 14.2088 0.0 36.7316    

0 Strain