Gene : Phvul.011G156900 P. vulgaris v2.1
Defline:  (1 of 3) PTHR31072:SF3 - TRANSCRIPTION FACTOR TCP10-RELATED Genomic Order:  1548
Name:  ? Phvul.011G156900 Secondary Identifier:  ? PAC:37155307
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G156900 0.5kb upstream 0.5kb upstream 3293 true Chr11: 44715009-44718301 Phaseolus vulgaris
Phvul.011G156900 0.5kb upstream 0.5kb upstream 500 false Chr11: 44715009-44715508 Phaseolus vulgaris
Phvul.011G156900 0.5kb downstream 0.5kb downstream 3293 true Chr11: 44715509-44718801 Phaseolus vulgaris
Phvul.011G156900 0.5kb downstream 0.5kb downstream 500 false Chr11: 44718302-44718801 Phaseolus vulgaris
Phvul.011G156900 1.0kb upstream 1.0kb upstream 3793 true Chr11: 44714509-44718301 Phaseolus vulgaris
Phvul.011G156900 1.0kb upstream 1.0kb upstream 1000 false Chr11: 44714509-44715508 Phaseolus vulgaris
Phvul.011G156900 1.0kb downstream 1.0kb downstream 3793 true Chr11: 44715509-44719301 Phaseolus vulgaris
Phvul.011G156900 1.0kb downstream 1.0kb downstream 1000 false Chr11: 44718302-44719301 Phaseolus vulgaris
Phvul.011G156900 2.0kb upstream 2.0kb upstream 4793 true Chr11: 44713509-44718301 Phaseolus vulgaris
Phvul.011G156900 2.0kb upstream 2.0kb upstream 2000 false Chr11: 44713509-44715508 Phaseolus vulgaris
Phvul.011G156900 2.0kb downstream 2.0kb downstream 4793 true Chr11: 44715509-44720301 Phaseolus vulgaris
Phvul.011G156900 2.0kb downstream 2.0kb downstream 2000 false Chr11: 44718302-44720301 Phaseolus vulgaris
Phvul.011G156900 5.0kb upstream 5.0kb upstream 7793 true Chr11: 44710509-44718301 Phaseolus vulgaris
Phvul.011G156900 5.0kb upstream 5.0kb upstream 5000 false Chr11: 44710509-44715508 Phaseolus vulgaris
Phvul.011G156900 5.0kb downstream 5.0kb downstream 7793 true Chr11: 44715509-44723301 Phaseolus vulgaris
Phvul.011G156900 5.0kb downstream 5.0kb downstream 5000 false Chr11: 44718302-44723301 Phaseolus vulgaris
Phvul.011G156900 10.0kb upstream 10.0kb upstream 12793 true Chr11: 44705509-44718301 Phaseolus vulgaris
Phvul.011G156900 10.0kb upstream 10.0kb upstream 10000 false Chr11: 44705509-44715508 Phaseolus vulgaris
Phvul.011G156900 10.0kb downstream 10.0kb downstream 12793 true Chr11: 44715509-44728301 Phaseolus vulgaris
Phvul.011G156900 10.0kb downstream 10.0kb downstream 10000 false Chr11: 44718302-44728301 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304327 5265 Fabidae View MSA
124070231 5270 Rosid View MSA
123742325 5271 Pentapetalae View MSA
122789743 5272 Eudicot View MSA
122046366 5273 Angiosperm View MSA
121350950 5274 Embryophyte View MSA
123381946 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.937251 0.0 3.06528    
cufflinks 7.60909 0.0 20.1169    
cufflinks 91.1675 0.0 269.269 High High
cufflinks 6.62996 0.0 17.643    
cufflinks 4.05562 0.0 11.2868    
cufflinks 74.9919 0.0 216.43 High High
cufflinks 2.07537 0.0 6.12219    
cufflinks 2.76857 0.0 7.95524    
cufflinks 2.49563 0.0 7.21391    
cufflinks 0.202121 0.0 0.768065 Low Low
cufflinks 3.93129 0.0 10.943    

0 Strain