Gene : Phvul.011G159000 P. vulgaris v2.1
Defline:  (1 of 3) K00026 - malate dehydrogenase (MDH2) Genomic Order:  1568
Name:  ? Phvul.011G159000 Secondary Identifier:  ? PAC:37155920
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris GLUCONEO-PWY Phaseolus vulgaris pathologic  
Pvulgaris GLYOXYLATE-BYPASS Phaseolus vulgaris pathologic  
Pvulgaris PWY-5464 Phaseolus vulgaris pathologic  
Pvulgaris PWY-561 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5690 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7115 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G159000 0.5kb upstream 0.5kb upstream 5383 true Chr11: 45264195-45269577 Phaseolus vulgaris
Phvul.011G159000 0.5kb upstream 0.5kb upstream 500 false Chr11: 45269078-45269577 Phaseolus vulgaris
Phvul.011G159000 0.5kb downstream 0.5kb downstream 5383 true Chr11: 45263695-45269077 Phaseolus vulgaris
Phvul.011G159000 0.5kb downstream 0.5kb downstream 500 false Chr11: 45263695-45264194 Phaseolus vulgaris
Phvul.011G159000 1.0kb upstream 1.0kb upstream 5883 true Chr11: 45264195-45270077 Phaseolus vulgaris
Phvul.011G159000 1.0kb upstream 1.0kb upstream 1000 false Chr11: 45269078-45270077 Phaseolus vulgaris
Phvul.011G159000 1.0kb downstream 1.0kb downstream 5883 true Chr11: 45263195-45269077 Phaseolus vulgaris
Phvul.011G159000 1.0kb downstream 1.0kb downstream 1000 false Chr11: 45263195-45264194 Phaseolus vulgaris
Phvul.011G159000 2.0kb upstream 2.0kb upstream 6883 true Chr11: 45264195-45271077 Phaseolus vulgaris
Phvul.011G159000 2.0kb upstream 2.0kb upstream 2000 false Chr11: 45269078-45271077 Phaseolus vulgaris
Phvul.011G159000 2.0kb downstream 2.0kb downstream 6883 true Chr11: 45262195-45269077 Phaseolus vulgaris
Phvul.011G159000 2.0kb downstream 2.0kb downstream 2000 false Chr11: 45262195-45264194 Phaseolus vulgaris
Phvul.011G159000 5.0kb upstream 5.0kb upstream 9883 true Chr11: 45264195-45274077 Phaseolus vulgaris
Phvul.011G159000 5.0kb upstream 5.0kb upstream 5000 false Chr11: 45269078-45274077 Phaseolus vulgaris
Phvul.011G159000 5.0kb downstream 5.0kb downstream 9883 true Chr11: 45259195-45269077 Phaseolus vulgaris
Phvul.011G159000 5.0kb downstream 5.0kb downstream 5000 false Chr11: 45259195-45264194 Phaseolus vulgaris
Phvul.011G159000 10.0kb upstream 10.0kb upstream 14883 true Chr11: 45264195-45279077 Phaseolus vulgaris
Phvul.011G159000 10.0kb upstream 10.0kb upstream 10000 false Chr11: 45269078-45279077 Phaseolus vulgaris
Phvul.011G159000 10.0kb downstream 10.0kb downstream 14883 true Chr11: 45254195-45269077 Phaseolus vulgaris
Phvul.011G159000 10.0kb downstream 10.0kb downstream 10000 false Chr11: 45254195-45264194 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300495 5265 Fabidae View MSA
124072115 5270 Rosid View MSA
123744980 5271 Pentapetalae View MSA
122794194 5272 Eudicot View MSA
122042635 5273 Angiosperm View MSA
121345492 5274 Embryophyte View MSA
123423974 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 164.154 0.0 487.365 High  
cufflinks 261.774 0.0 831.547 High  
cufflinks 162.674 0.0 479.923 High  
cufflinks 569.612 0.0 2150.92 High High
cufflinks 202.953 0.0 619.999 High  
cufflinks 147.979 0.0 430.496 High  
cufflinks 137.24 0.0 396.394 High  
cufflinks 186.305 0.0 560.439 High  
cufflinks 216.792 0.0 666.805 High  
cufflinks 88.0413 0.0 241.78 High Low
cufflinks 219.869 0.0 678.757 High  

0 Strain