Gene : Phvul.011G162900 P. vulgaris v2.1
Defline:  (1 of 180) PF00847 - AP2 domain (AP2) Genomic Order:  1607
Name:  ? Phvul.011G162900 Secondary Identifier:  ? PAC:37156582
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G162900 0.5kb upstream 0.5kb upstream 1537 true Chr11: 46144408-46145944 Phaseolus vulgaris
Phvul.011G162900 0.5kb upstream 0.5kb upstream 500 false Chr11: 46144408-46144907 Phaseolus vulgaris
Phvul.011G162900 0.5kb downstream 0.5kb downstream 1537 true Chr11: 46144908-46146444 Phaseolus vulgaris
Phvul.011G162900 0.5kb downstream 0.5kb downstream 500 false Chr11: 46145945-46146444 Phaseolus vulgaris
Phvul.011G162900 1.0kb upstream 1.0kb upstream 2037 true Chr11: 46143908-46145944 Phaseolus vulgaris
Phvul.011G162900 1.0kb upstream 1.0kb upstream 1000 false Chr11: 46143908-46144907 Phaseolus vulgaris
Phvul.011G162900 1.0kb downstream 1.0kb downstream 2037 true Chr11: 46144908-46146944 Phaseolus vulgaris
Phvul.011G162900 1.0kb downstream 1.0kb downstream 1000 false Chr11: 46145945-46146944 Phaseolus vulgaris
Phvul.011G162900 2.0kb upstream 2.0kb upstream 3037 true Chr11: 46142908-46145944 Phaseolus vulgaris
Phvul.011G162900 2.0kb upstream 2.0kb upstream 2000 false Chr11: 46142908-46144907 Phaseolus vulgaris
Phvul.011G162900 2.0kb downstream 2.0kb downstream 3037 true Chr11: 46144908-46147944 Phaseolus vulgaris
Phvul.011G162900 2.0kb downstream 2.0kb downstream 2000 false Chr11: 46145945-46147944 Phaseolus vulgaris
Phvul.011G162900 5.0kb upstream 5.0kb upstream 6037 true Chr11: 46139908-46145944 Phaseolus vulgaris
Phvul.011G162900 5.0kb upstream 5.0kb upstream 5000 false Chr11: 46139908-46144907 Phaseolus vulgaris
Phvul.011G162900 5.0kb downstream 5.0kb downstream 6037 true Chr11: 46144908-46150944 Phaseolus vulgaris
Phvul.011G162900 5.0kb downstream 5.0kb downstream 5000 false Chr11: 46145945-46150944 Phaseolus vulgaris
Phvul.011G162900 10.0kb upstream 10.0kb upstream 11037 true Chr11: 46134908-46145944 Phaseolus vulgaris
Phvul.011G162900 10.0kb upstream 10.0kb upstream 10000 false Chr11: 46134908-46144907 Phaseolus vulgaris
Phvul.011G162900 10.0kb downstream 10.0kb downstream 11037 true Chr11: 46144908-46155944 Phaseolus vulgaris
Phvul.011G162900 10.0kb downstream 10.0kb downstream 10000 false Chr11: 46145945-46155944 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300094 5265 Fabidae View MSA
124071408 5270 Rosid View MSA
123744061 5271 Pentapetalae View MSA
122791719 5272 Eudicot View MSA
122049614 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.55562 0.0 11.1679    
cufflinks 11.5292 0.0 32.1056    
cufflinks 3.52193 0.0 11.2063    
cufflinks 3.72944 0.0 11.4725    
cufflinks 7.76313 0.0 22.1006    
cufflinks 4.1044 0.0 12.794    
cufflinks 17.612 0.0 46.7939    
cufflinks 7.88667 0.0 22.7705    
cufflinks 4.80217 0.0 14.4927    
cufflinks 81.3047 0.0 214.212 High High
cufflinks 6.29656 0.0 18.3453    

0 Strain