Gene : Phvul.011G145700 P. vulgaris v2.1
Defline:  (1 of 252) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  1423
Name:  ? Phvul.011G145700 Secondary Identifier:  ? PAC:37156994
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G145700 0.5kb upstream 0.5kb upstream 3633 true Chr11: 37723618-37727250 Phaseolus vulgaris
Phvul.011G145700 0.5kb upstream 0.5kb upstream 500 false Chr11: 37726751-37727250 Phaseolus vulgaris
Phvul.011G145700 0.5kb downstream 0.5kb downstream 3633 true Chr11: 37723118-37726750 Phaseolus vulgaris
Phvul.011G145700 0.5kb downstream 0.5kb downstream 500 false Chr11: 37723118-37723617 Phaseolus vulgaris
Phvul.011G145700 1.0kb upstream 1.0kb upstream 4133 true Chr11: 37723618-37727750 Phaseolus vulgaris
Phvul.011G145700 1.0kb upstream 1.0kb upstream 1000 false Chr11: 37726751-37727750 Phaseolus vulgaris
Phvul.011G145700 1.0kb downstream 1.0kb downstream 4133 true Chr11: 37722618-37726750 Phaseolus vulgaris
Phvul.011G145700 1.0kb downstream 1.0kb downstream 1000 false Chr11: 37722618-37723617 Phaseolus vulgaris
Phvul.011G145700 2.0kb upstream 2.0kb upstream 5133 true Chr11: 37723618-37728750 Phaseolus vulgaris
Phvul.011G145700 2.0kb upstream 2.0kb upstream 2000 false Chr11: 37726751-37728750 Phaseolus vulgaris
Phvul.011G145700 2.0kb downstream 2.0kb downstream 5133 true Chr11: 37721618-37726750 Phaseolus vulgaris
Phvul.011G145700 2.0kb downstream 2.0kb downstream 2000 false Chr11: 37721618-37723617 Phaseolus vulgaris
Phvul.011G145700 5.0kb upstream 5.0kb upstream 8133 true Chr11: 37723618-37731750 Phaseolus vulgaris
Phvul.011G145700 5.0kb upstream 5.0kb upstream 5000 false Chr11: 37726751-37731750 Phaseolus vulgaris
Phvul.011G145700 5.0kb downstream 5.0kb downstream 8133 true Chr11: 37718618-37726750 Phaseolus vulgaris
Phvul.011G145700 5.0kb downstream 5.0kb downstream 5000 false Chr11: 37718618-37723617 Phaseolus vulgaris
Phvul.011G145700 10.0kb upstream 10.0kb upstream 13133 true Chr11: 37723618-37736750 Phaseolus vulgaris
Phvul.011G145700 10.0kb upstream 10.0kb upstream 10000 false Chr11: 37726751-37736750 Phaseolus vulgaris
Phvul.011G145700 10.0kb downstream 10.0kb downstream 13133 true Chr11: 37713618-37726750 Phaseolus vulgaris
Phvul.011G145700 10.0kb downstream 10.0kb downstream 10000 false Chr11: 37713618-37723617 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305479 5265 Fabidae View MSA
124065656 5270 Rosid View MSA
123746310 5271 Pentapetalae View MSA
122791948 5272 Eudicot View MSA
122051373 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.894 0.0 76.2613    
cufflinks 34.2641 0.0 89.9548 High High
cufflinks 11.3047 0.0 32.5778   Low
cufflinks 40.0133 0.0 104.088 High High
cufflinks 20.7862 0.0 56.3551    
cufflinks 7.43659 0.0 22.4795   Low
cufflinks 16.6245 0.0 46.0618    
cufflinks 20.9415 0.0 56.9346    
cufflinks 19.1412 0.0 52.4817    
cufflinks 29.2492 0.0 77.4263    
cufflinks 20.581 0.0 55.983    

0 Strain