Gene : Phvul.011G148800 P. vulgaris v2.1
Defline:  (1 of 1) 1.13.11.5 - Homogentisate 1,2-dioxygenase / Homogentisicase Genomic Order:  1473
Name:  ? Phvul.011G148800 Secondary Identifier:  ? PAC:37157078
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G148800 0.5kb upstream 0.5kb upstream 7727 true Chr11: 41889433-41897159 Phaseolus vulgaris
Phvul.011G148800 0.5kb upstream 0.5kb upstream 500 false Chr11: 41889433-41889932 Phaseolus vulgaris
Phvul.011G148800 0.5kb downstream 0.5kb downstream 7727 true Chr11: 41889933-41897659 Phaseolus vulgaris
Phvul.011G148800 0.5kb downstream 0.5kb downstream 500 false Chr11: 41897160-41897659 Phaseolus vulgaris
Phvul.011G148800 1.0kb upstream 1.0kb upstream 8227 true Chr11: 41888933-41897159 Phaseolus vulgaris
Phvul.011G148800 1.0kb upstream 1.0kb upstream 1000 false Chr11: 41888933-41889932 Phaseolus vulgaris
Phvul.011G148800 1.0kb downstream 1.0kb downstream 8227 true Chr11: 41889933-41898159 Phaseolus vulgaris
Phvul.011G148800 1.0kb downstream 1.0kb downstream 1000 false Chr11: 41897160-41898159 Phaseolus vulgaris
Phvul.011G148800 2.0kb upstream 2.0kb upstream 9227 true Chr11: 41887933-41897159 Phaseolus vulgaris
Phvul.011G148800 2.0kb upstream 2.0kb upstream 2000 false Chr11: 41887933-41889932 Phaseolus vulgaris
Phvul.011G148800 2.0kb downstream 2.0kb downstream 9227 true Chr11: 41889933-41899159 Phaseolus vulgaris
Phvul.011G148800 2.0kb downstream 2.0kb downstream 2000 false Chr11: 41897160-41899159 Phaseolus vulgaris
Phvul.011G148800 5.0kb upstream 5.0kb upstream 12227 true Chr11: 41884933-41897159 Phaseolus vulgaris
Phvul.011G148800 5.0kb upstream 5.0kb upstream 5000 false Chr11: 41884933-41889932 Phaseolus vulgaris
Phvul.011G148800 5.0kb downstream 5.0kb downstream 12227 true Chr11: 41889933-41902159 Phaseolus vulgaris
Phvul.011G148800 5.0kb downstream 5.0kb downstream 5000 false Chr11: 41897160-41902159 Phaseolus vulgaris
Phvul.011G148800 10.0kb upstream 10.0kb upstream 17227 true Chr11: 41879933-41897159 Phaseolus vulgaris
Phvul.011G148800 10.0kb upstream 10.0kb upstream 10000 false Chr11: 41879933-41889932 Phaseolus vulgaris
Phvul.011G148800 10.0kb downstream 10.0kb downstream 17227 true Chr11: 41889933-41907159 Phaseolus vulgaris
Phvul.011G148800 10.0kb downstream 10.0kb downstream 10000 false Chr11: 41897160-41907159 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302891 5265 Fabidae View MSA
124064618 5270 Rosid View MSA
123740810 5271 Pentapetalae View MSA
122786399 5272 Eudicot View MSA
122042428 5273 Angiosperm View MSA
121346859 5274 Embryophyte View MSA
123424235 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 94.0672 0.0 259.778 High High
cufflinks 26.0693 0.0 67.4113    
cufflinks 4.93395 0.0 14.2607   Low
cufflinks 19.1893 0.0 49.9282    
cufflinks 10.9665 0.0 29.5511    
cufflinks 4.26549 0.0 12.5595   Low
cufflinks 20.4361 0.0 53.0912    
cufflinks 12.0711 0.0 32.2492    
cufflinks 26.538 0.0 68.6216    
cufflinks 57.1782 0.0 151.201 High High
cufflinks 6.65408 0.0 18.7794    

0 Strain