Gene : Phvul.011G135800 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22880:SF172 - TRANSCRIPTION FACTOR GTE3, CHLOROPLASTIC-RELATED Genomic Order:  1288
Name:  ? Phvul.011G135800 Secondary Identifier:  ? PAC:37156410
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G135800 0.5kb upstream 0.5kb upstream 5560 true Chr11: 31244063-31249622 Phaseolus vulgaris
Phvul.011G135800 0.5kb upstream 0.5kb upstream 500 false Chr11: 31249123-31249622 Phaseolus vulgaris
Phvul.011G135800 0.5kb downstream 0.5kb downstream 5560 true Chr11: 31243563-31249122 Phaseolus vulgaris
Phvul.011G135800 0.5kb downstream 0.5kb downstream 500 false Chr11: 31243563-31244062 Phaseolus vulgaris
Phvul.011G135800 1.0kb upstream 1.0kb upstream 6060 true Chr11: 31244063-31250122 Phaseolus vulgaris
Phvul.011G135800 1.0kb upstream 1.0kb upstream 1000 false Chr11: 31249123-31250122 Phaseolus vulgaris
Phvul.011G135800 1.0kb downstream 1.0kb downstream 6060 true Chr11: 31243063-31249122 Phaseolus vulgaris
Phvul.011G135800 1.0kb downstream 1.0kb downstream 1000 false Chr11: 31243063-31244062 Phaseolus vulgaris
Phvul.011G135800 2.0kb upstream 2.0kb upstream 7060 true Chr11: 31244063-31251122 Phaseolus vulgaris
Phvul.011G135800 2.0kb upstream 2.0kb upstream 2000 false Chr11: 31249123-31251122 Phaseolus vulgaris
Phvul.011G135800 2.0kb downstream 2.0kb downstream 7060 true Chr11: 31242063-31249122 Phaseolus vulgaris
Phvul.011G135800 2.0kb downstream 2.0kb downstream 2000 false Chr11: 31242063-31244062 Phaseolus vulgaris
Phvul.011G135800 5.0kb upstream 5.0kb upstream 10060 true Chr11: 31244063-31254122 Phaseolus vulgaris
Phvul.011G135800 5.0kb upstream 5.0kb upstream 5000 false Chr11: 31249123-31254122 Phaseolus vulgaris
Phvul.011G135800 5.0kb downstream 5.0kb downstream 10060 true Chr11: 31239063-31249122 Phaseolus vulgaris
Phvul.011G135800 5.0kb downstream 5.0kb downstream 5000 false Chr11: 31239063-31244062 Phaseolus vulgaris
Phvul.011G135800 10.0kb upstream 10.0kb upstream 15060 true Chr11: 31244063-31259122 Phaseolus vulgaris
Phvul.011G135800 10.0kb upstream 10.0kb upstream 10000 false Chr11: 31249123-31259122 Phaseolus vulgaris
Phvul.011G135800 10.0kb downstream 10.0kb downstream 15060 true Chr11: 31234063-31249122 Phaseolus vulgaris
Phvul.011G135800 10.0kb downstream 10.0kb downstream 10000 false Chr11: 31234063-31244062 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312344 5265 Fabidae View MSA
124062568 5270 Rosid View MSA
123750447 5271 Pentapetalae View MSA
122794064 5272 Eudicot View MSA
122046365 5273 Angiosperm View MSA
123429103 5275 Viridiplantae View MSA
121348953 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.00333 0.0 18.1886   Low
cufflinks 13.3816 0.0 34.7601    
cufflinks 14.0406 0.0 36.5438    
cufflinks 5.55443 0.0 14.6398   Low
cufflinks 13.8862 0.0 36.0321    
cufflinks 19.1044 0.0 50.5073    
cufflinks 22.1974 0.0 59.5722    
cufflinks 19.5027 0.0 51.8198    
cufflinks 17.9615 0.0 47.3658    
cufflinks 25.5404 0.0 68.896   High
cufflinks 14.0717 0.0 36.5787    

0 Strain