Gene : Phvul.011G127800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11879//PTHR11879:SF18 - ASPARTATE AMINOTRANSFERASE // SUBFAMILY NOT NAMED Genomic Order:  1308
Name:  ? Phvul.011G127800 Secondary Identifier:  ? PAC:37156165
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ASPARTATE-DEG1-PWY Phaseolus vulgaris pathologic  
Pvulgaris ASPARTATESYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-3001 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7115 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7117 Phaseolus vulgaris pathologic  
Pvulgaris THRESYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G127800 0.5kb upstream 0.5kb upstream 10340 true Chr11: 32257572-32267911 Phaseolus vulgaris
Phvul.011G127800 0.5kb upstream 0.5kb upstream 500 false Chr11: 32267412-32267911 Phaseolus vulgaris
Phvul.011G127800 0.5kb downstream 0.5kb downstream 10340 true Chr11: 32257072-32267411 Phaseolus vulgaris
Phvul.011G127800 0.5kb downstream 0.5kb downstream 500 false Chr11: 32257072-32257571 Phaseolus vulgaris
Phvul.011G127800 1.0kb upstream 1.0kb upstream 10840 true Chr11: 32257572-32268411 Phaseolus vulgaris
Phvul.011G127800 1.0kb upstream 1.0kb upstream 1000 false Chr11: 32267412-32268411 Phaseolus vulgaris
Phvul.011G127800 1.0kb downstream 1.0kb downstream 10840 true Chr11: 32256572-32267411 Phaseolus vulgaris
Phvul.011G127800 1.0kb downstream 1.0kb downstream 1000 false Chr11: 32256572-32257571 Phaseolus vulgaris
Phvul.011G127800 2.0kb upstream 2.0kb upstream 11840 true Chr11: 32257572-32269411 Phaseolus vulgaris
Phvul.011G127800 2.0kb upstream 2.0kb upstream 2000 false Chr11: 32267412-32269411 Phaseolus vulgaris
Phvul.011G127800 2.0kb downstream 2.0kb downstream 11840 true Chr11: 32255572-32267411 Phaseolus vulgaris
Phvul.011G127800 2.0kb downstream 2.0kb downstream 2000 false Chr11: 32255572-32257571 Phaseolus vulgaris
Phvul.011G127800 5.0kb upstream 5.0kb upstream 14840 true Chr11: 32257572-32272411 Phaseolus vulgaris
Phvul.011G127800 5.0kb upstream 5.0kb upstream 5000 false Chr11: 32267412-32272411 Phaseolus vulgaris
Phvul.011G127800 5.0kb downstream 5.0kb downstream 14840 true Chr11: 32252572-32267411 Phaseolus vulgaris
Phvul.011G127800 5.0kb downstream 5.0kb downstream 5000 false Chr11: 32252572-32257571 Phaseolus vulgaris
Phvul.011G127800 10.0kb upstream 10.0kb upstream 19840 true Chr11: 32257572-32277411 Phaseolus vulgaris
Phvul.011G127800 10.0kb upstream 10.0kb upstream 10000 false Chr11: 32267412-32277411 Phaseolus vulgaris
Phvul.011G127800 10.0kb downstream 10.0kb downstream 19840 true Chr11: 32247572-32267411 Phaseolus vulgaris
Phvul.011G127800 10.0kb downstream 10.0kb downstream 10000 false Chr11: 32247572-32257571 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301166 5265 Fabidae View MSA
124063482 5270 Rosid View MSA
123737145 5271 Pentapetalae View MSA
122793092 5272 Eudicot View MSA
122046072 5273 Angiosperm View MSA
121344214 5274 Embryophyte View MSA
123424622 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.3072 0.0 57.2447    
cufflinks 10.321 0.0 31.6465    
cufflinks 12.64 0.0 37.5151    
cufflinks 43.7046 0.0 123.539 High High
cufflinks 8.90655 0.0 28.0024    
cufflinks 12.119 0.0 36.1824    
cufflinks 6.41945 0.0 21.4441   Low
cufflinks 4.64863 0.0 16.4231   Low
cufflinks 14.6086 0.0 42.3819    
cufflinks 11.2413 0.0 33.9892    
cufflinks 8.86351 0.0 28.0473    

0 Strain