Gene : Phvul.011G130300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31165:SF10 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Genomic Order:  1262
Name:  ? Phvul.011G130300 Secondary Identifier:  ? PAC:37155951
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G130300 0.5kb upstream 0.5kb upstream 3842 true Chr11: 29713120-29716961 Phaseolus vulgaris
Phvul.011G130300 0.5kb upstream 0.5kb upstream 500 false Chr11: 29713120-29713619 Phaseolus vulgaris
Phvul.011G130300 0.5kb downstream 0.5kb downstream 3842 true Chr11: 29713620-29717461 Phaseolus vulgaris
Phvul.011G130300 0.5kb downstream 0.5kb downstream 500 false Chr11: 29716962-29717461 Phaseolus vulgaris
Phvul.011G130300 1.0kb upstream 1.0kb upstream 4342 true Chr11: 29712620-29716961 Phaseolus vulgaris
Phvul.011G130300 1.0kb upstream 1.0kb upstream 1000 false Chr11: 29712620-29713619 Phaseolus vulgaris
Phvul.011G130300 1.0kb downstream 1.0kb downstream 4342 true Chr11: 29713620-29717961 Phaseolus vulgaris
Phvul.011G130300 1.0kb downstream 1.0kb downstream 1000 false Chr11: 29716962-29717961 Phaseolus vulgaris
Phvul.011G130300 2.0kb upstream 2.0kb upstream 5342 true Chr11: 29711620-29716961 Phaseolus vulgaris
Phvul.011G130300 2.0kb upstream 2.0kb upstream 2000 false Chr11: 29711620-29713619 Phaseolus vulgaris
Phvul.011G130300 2.0kb downstream 2.0kb downstream 5342 true Chr11: 29713620-29718961 Phaseolus vulgaris
Phvul.011G130300 2.0kb downstream 2.0kb downstream 2000 false Chr11: 29716962-29718961 Phaseolus vulgaris
Phvul.011G130300 5.0kb upstream 5.0kb upstream 8342 true Chr11: 29708620-29716961 Phaseolus vulgaris
Phvul.011G130300 5.0kb upstream 5.0kb upstream 5000 false Chr11: 29708620-29713619 Phaseolus vulgaris
Phvul.011G130300 5.0kb downstream 5.0kb downstream 8342 true Chr11: 29713620-29721961 Phaseolus vulgaris
Phvul.011G130300 5.0kb downstream 5.0kb downstream 5000 false Chr11: 29716962-29721961 Phaseolus vulgaris
Phvul.011G130300 10.0kb upstream 10.0kb upstream 13342 true Chr11: 29703620-29716961 Phaseolus vulgaris
Phvul.011G130300 10.0kb upstream 10.0kb upstream 10000 false Chr11: 29703620-29713619 Phaseolus vulgaris
Phvul.011G130300 10.0kb downstream 10.0kb downstream 13342 true Chr11: 29713620-29726961 Phaseolus vulgaris
Phvul.011G130300 10.0kb downstream 10.0kb downstream 10000 false Chr11: 29716962-29726961 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792183 5273 Angiosperm View MSA
122309730 5265 Fabidae View MSA
124064953 5270 Rosid View MSA
123750207 5271 Pentapetalae View MSA
122796804 5272 Eudicot View MSA
121063429 5274 Embryophyte View MSA
123103178 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.824362 0.0 3.08383    
cufflinks 0.548876 0.0 2.11828    
cufflinks 0.182148 0.0 0.764783 Low  
cufflinks 0.399648 0.0 1.57966 Low  
cufflinks 65.3422 0.0 169.357 High High
cufflinks 0.278775 0.0 1.13287 Low  
cufflinks 1.53761 0.0 5.4061    
cufflinks 0.0592319 0.0 0.278045 Low Low
cufflinks 0.901524 0.0 3.3339    
cufflinks 2.71746 0.0 9.0401    
cufflinks 67.0864 0.0 173.967 High High

0 Strain