Gene : Phvul.011G119500 P. vulgaris v2.1
Defline:  (1 of 4) PTHR13935:SF53 - BASIC HELIX-LOOP-HELIX DOMAIN-CONTAINING PROTEIN Genomic Order:  1183
Name:  ? Phvul.011G119500 Secondary Identifier:  ? PAC:37156324
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G119500 0.5kb upstream 0.5kb upstream 1652 true Chr11: 18558234-18559885 Phaseolus vulgaris
Phvul.011G119500 0.5kb upstream 0.5kb upstream 500 false Chr11: 18559386-18559885 Phaseolus vulgaris
Phvul.011G119500 0.5kb downstream 0.5kb downstream 1652 true Chr11: 18557734-18559385 Phaseolus vulgaris
Phvul.011G119500 0.5kb downstream 0.5kb downstream 500 false Chr11: 18557734-18558233 Phaseolus vulgaris
Phvul.011G119500 1.0kb upstream 1.0kb upstream 2152 true Chr11: 18558234-18560385 Phaseolus vulgaris
Phvul.011G119500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 18559386-18560385 Phaseolus vulgaris
Phvul.011G119500 1.0kb downstream 1.0kb downstream 2152 true Chr11: 18557234-18559385 Phaseolus vulgaris
Phvul.011G119500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 18557234-18558233 Phaseolus vulgaris
Phvul.011G119500 2.0kb upstream 2.0kb upstream 3152 true Chr11: 18558234-18561385 Phaseolus vulgaris
Phvul.011G119500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 18559386-18561385 Phaseolus vulgaris
Phvul.011G119500 2.0kb downstream 2.0kb downstream 3152 true Chr11: 18556234-18559385 Phaseolus vulgaris
Phvul.011G119500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 18556234-18558233 Phaseolus vulgaris
Phvul.011G119500 5.0kb upstream 5.0kb upstream 6152 true Chr11: 18558234-18564385 Phaseolus vulgaris
Phvul.011G119500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 18559386-18564385 Phaseolus vulgaris
Phvul.011G119500 5.0kb downstream 5.0kb downstream 6152 true Chr11: 18553234-18559385 Phaseolus vulgaris
Phvul.011G119500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 18553234-18558233 Phaseolus vulgaris
Phvul.011G119500 10.0kb upstream 10.0kb upstream 11152 true Chr11: 18558234-18569385 Phaseolus vulgaris
Phvul.011G119500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 18559386-18569385 Phaseolus vulgaris
Phvul.011G119500 10.0kb downstream 10.0kb downstream 11152 true Chr11: 18548234-18559385 Phaseolus vulgaris
Phvul.011G119500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 18548234-18558233 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040931 5273 Angiosperm View MSA
122308200 5265 Fabidae View MSA
124070825 5270 Rosid View MSA
123745471 5271 Pentapetalae View MSA
122795033 5272 Eudicot View MSA
121309769 5274 Embryophyte View MSA
123347432 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.3612 0.0 8.25179   High
cufflinks 0.0482585 0.0 0.241033 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.191175 0.0 0.829022 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0665984 0.0 0.321105 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.64039 0.0 5.95534    
cufflinks 0.68888 0.0 2.68932    

0 Strain