Gene : Phvul.011G101700 P. vulgaris v2.1
Defline:  (1 of 10) PTHR13301:SF53 - CELLULOSE SYNTHASE-LIKE PROTEIN B1-RELATED Genomic Order:  1019
Name:  ? Phvul.011G101700 Secondary Identifier:  ? PAC:37157214
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1001 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G101700 0.5kb upstream 0.5kb upstream 13957 true Chr11: 10953524-10967480 Phaseolus vulgaris
Phvul.011G101700 0.5kb upstream 0.5kb upstream 500 false Chr11: 10966981-10967480 Phaseolus vulgaris
Phvul.011G101700 0.5kb downstream 0.5kb downstream 13957 true Chr11: 10953024-10966980 Phaseolus vulgaris
Phvul.011G101700 0.5kb downstream 0.5kb downstream 500 false Chr11: 10953024-10953523 Phaseolus vulgaris
Phvul.011G101700 1.0kb upstream 1.0kb upstream 14457 true Chr11: 10953524-10967980 Phaseolus vulgaris
Phvul.011G101700 1.0kb upstream 1.0kb upstream 1000 false Chr11: 10966981-10967980 Phaseolus vulgaris
Phvul.011G101700 1.0kb downstream 1.0kb downstream 14457 true Chr11: 10952524-10966980 Phaseolus vulgaris
Phvul.011G101700 1.0kb downstream 1.0kb downstream 1000 false Chr11: 10952524-10953523 Phaseolus vulgaris
Phvul.011G101700 2.0kb upstream 2.0kb upstream 15457 true Chr11: 10953524-10968980 Phaseolus vulgaris
Phvul.011G101700 2.0kb upstream 2.0kb upstream 2000 false Chr11: 10966981-10968980 Phaseolus vulgaris
Phvul.011G101700 2.0kb downstream 2.0kb downstream 15457 true Chr11: 10951524-10966980 Phaseolus vulgaris
Phvul.011G101700 2.0kb downstream 2.0kb downstream 2000 false Chr11: 10951524-10953523 Phaseolus vulgaris
Phvul.011G101700 5.0kb upstream 5.0kb upstream 18457 true Chr11: 10953524-10971980 Phaseolus vulgaris
Phvul.011G101700 5.0kb upstream 5.0kb upstream 5000 false Chr11: 10966981-10971980 Phaseolus vulgaris
Phvul.011G101700 5.0kb downstream 5.0kb downstream 18457 true Chr11: 10948524-10966980 Phaseolus vulgaris
Phvul.011G101700 5.0kb downstream 5.0kb downstream 5000 false Chr11: 10948524-10953523 Phaseolus vulgaris
Phvul.011G101700 10.0kb upstream 10.0kb upstream 23457 true Chr11: 10953524-10976980 Phaseolus vulgaris
Phvul.011G101700 10.0kb upstream 10.0kb upstream 10000 false Chr11: 10966981-10976980 Phaseolus vulgaris
Phvul.011G101700 10.0kb downstream 10.0kb downstream 23457 true Chr11: 10943524-10966980 Phaseolus vulgaris
Phvul.011G101700 10.0kb downstream 10.0kb downstream 10000 false Chr11: 10943524-10953523 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315720 5265 Fabidae View MSA
124075544 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.56109 0.0 12.0313    
cufflinks 2.23892 0.0 15.489    
cufflinks 0.960526 0.0 7.17166   Low
cufflinks 0.650019 0.0 2.85798   Low
cufflinks 3.19392 0.0 19.5672    
cufflinks 1.38498 0.0 8.17344    
cufflinks 2.44539 0.0 14.2967    
cufflinks 8.38094 0.0 40.793   High
cufflinks 3.16351 0.0 16.9181    
cufflinks 6.12626 0.0 40.104   High
cufflinks 1.55279 0.0 12.5129    

0 Strain