Gene : Phvul.011G100800 P. vulgaris v2.1
Defline:  (1 of 2) PTHR23024//PTHR23024:SF189 - MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES // SUBFAMILY NOT NAMED Genomic Order:  1010
Name:  ? Phvul.011G100800 Secondary Identifier:  ? PAC:37155063
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6303 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G100800 0.5kb upstream 0.5kb upstream 1880 true Chr11: 10836554-10838433 Phaseolus vulgaris
Phvul.011G100800 0.5kb upstream 0.5kb upstream 500 false Chr11: 10836554-10837053 Phaseolus vulgaris
Phvul.011G100800 0.5kb downstream 0.5kb downstream 1880 true Chr11: 10837054-10838933 Phaseolus vulgaris
Phvul.011G100800 0.5kb downstream 0.5kb downstream 500 false Chr11: 10838434-10838933 Phaseolus vulgaris
Phvul.011G100800 1.0kb upstream 1.0kb upstream 2380 true Chr11: 10836054-10838433 Phaseolus vulgaris
Phvul.011G100800 1.0kb upstream 1.0kb upstream 1000 false Chr11: 10836054-10837053 Phaseolus vulgaris
Phvul.011G100800 1.0kb downstream 1.0kb downstream 2380 true Chr11: 10837054-10839433 Phaseolus vulgaris
Phvul.011G100800 1.0kb downstream 1.0kb downstream 1000 false Chr11: 10838434-10839433 Phaseolus vulgaris
Phvul.011G100800 2.0kb upstream 2.0kb upstream 3380 true Chr11: 10835054-10838433 Phaseolus vulgaris
Phvul.011G100800 2.0kb upstream 2.0kb upstream 2000 false Chr11: 10835054-10837053 Phaseolus vulgaris
Phvul.011G100800 2.0kb downstream 2.0kb downstream 3380 true Chr11: 10837054-10840433 Phaseolus vulgaris
Phvul.011G100800 2.0kb downstream 2.0kb downstream 2000 false Chr11: 10838434-10840433 Phaseolus vulgaris
Phvul.011G100800 5.0kb upstream 5.0kb upstream 6380 true Chr11: 10832054-10838433 Phaseolus vulgaris
Phvul.011G100800 5.0kb upstream 5.0kb upstream 5000 false Chr11: 10832054-10837053 Phaseolus vulgaris
Phvul.011G100800 5.0kb downstream 5.0kb downstream 6380 true Chr11: 10837054-10843433 Phaseolus vulgaris
Phvul.011G100800 5.0kb downstream 5.0kb downstream 5000 false Chr11: 10838434-10843433 Phaseolus vulgaris
Phvul.011G100800 10.0kb upstream 10.0kb upstream 11380 true Chr11: 10827054-10838433 Phaseolus vulgaris
Phvul.011G100800 10.0kb upstream 10.0kb upstream 10000 false Chr11: 10827054-10837053 Phaseolus vulgaris
Phvul.011G100800 10.0kb downstream 10.0kb downstream 11380 true Chr11: 10837054-10848433 Phaseolus vulgaris
Phvul.011G100800 10.0kb downstream 10.0kb downstream 10000 false Chr11: 10838434-10848433 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299309 5265 Fabidae View MSA
124070947 5270 Rosid View MSA
123751656 5271 Pentapetalae View MSA
122793188 5272 Eudicot View MSA
122047300 5273 Angiosperm View MSA
123428915 5275 Viridiplantae View MSA
121350136 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.941019 0.0 3.37054    
cufflinks 1.56444 0.0 5.332    
cufflinks 3.0433 0.0 9.61589    
cufflinks 0.456352 0.0 1.74762 Low Low
cufflinks 7.04311 0.0 20.2777    
cufflinks 0.726861 0.0 2.67226   Low
cufflinks 46.8781 0.0 121.521 High High
cufflinks 95.3926 0.0 257.866 High High
cufflinks 51.0927 0.0 132.651 High High
cufflinks 1.89885 0.0 6.32744    
cufflinks 9.03019 0.0 25.3284    

0 Strain