Gene : Phvul.011G103700 P. vulgaris v2.1
Defline:  (1 of 3) 4.2.1.3 - Aconitate hydratase / Citrate(isocitrate) hydro-lyase Genomic Order:  1043
Name:  ? Phvul.011G103700 Secondary Identifier:  ? PAC:37156400
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris GLYOXYLATE-BYPASS Phaseolus vulgaris pathologic  
Pvulgaris PWY-5464 Phaseolus vulgaris pathologic  
Pvulgaris PWY-561 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5690 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6549 Phaseolus vulgaris pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G103700 0.5kb upstream 0.5kb upstream 14036 true Chr11: 11631119-11645154 Phaseolus vulgaris
Phvul.011G103700 0.5kb upstream 0.5kb upstream 500 false Chr11: 11631119-11631618 Phaseolus vulgaris
Phvul.011G103700 0.5kb downstream 0.5kb downstream 14036 true Chr11: 11631619-11645654 Phaseolus vulgaris
Phvul.011G103700 0.5kb downstream 0.5kb downstream 500 false Chr11: 11645155-11645654 Phaseolus vulgaris
Phvul.011G103700 1.0kb upstream 1.0kb upstream 14536 true Chr11: 11630619-11645154 Phaseolus vulgaris
Phvul.011G103700 1.0kb upstream 1.0kb upstream 1000 false Chr11: 11630619-11631618 Phaseolus vulgaris
Phvul.011G103700 1.0kb downstream 1.0kb downstream 14536 true Chr11: 11631619-11646154 Phaseolus vulgaris
Phvul.011G103700 1.0kb downstream 1.0kb downstream 1000 false Chr11: 11645155-11646154 Phaseolus vulgaris
Phvul.011G103700 2.0kb upstream 2.0kb upstream 15536 true Chr11: 11629619-11645154 Phaseolus vulgaris
Phvul.011G103700 2.0kb upstream 2.0kb upstream 2000 false Chr11: 11629619-11631618 Phaseolus vulgaris
Phvul.011G103700 2.0kb downstream 2.0kb downstream 15536 true Chr11: 11631619-11647154 Phaseolus vulgaris
Phvul.011G103700 2.0kb downstream 2.0kb downstream 2000 false Chr11: 11645155-11647154 Phaseolus vulgaris
Phvul.011G103700 5.0kb upstream 5.0kb upstream 18536 true Chr11: 11626619-11645154 Phaseolus vulgaris
Phvul.011G103700 5.0kb upstream 5.0kb upstream 5000 false Chr11: 11626619-11631618 Phaseolus vulgaris
Phvul.011G103700 5.0kb downstream 5.0kb downstream 18536 true Chr11: 11631619-11650154 Phaseolus vulgaris
Phvul.011G103700 5.0kb downstream 5.0kb downstream 5000 false Chr11: 11645155-11650154 Phaseolus vulgaris
Phvul.011G103700 10.0kb upstream 10.0kb upstream 23536 true Chr11: 11621619-11645154 Phaseolus vulgaris
Phvul.011G103700 10.0kb upstream 10.0kb upstream 10000 false Chr11: 11621619-11631618 Phaseolus vulgaris
Phvul.011G103700 10.0kb downstream 10.0kb downstream 23536 true Chr11: 11631619-11655154 Phaseolus vulgaris
Phvul.011G103700 10.0kb downstream 10.0kb downstream 10000 false Chr11: 11645155-11655154 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296537 5265 Fabidae View MSA
124069488 5270 Rosid View MSA
123752886 5271 Pentapetalae View MSA
122795491 5272 Eudicot View MSA
122043810 5273 Angiosperm View MSA
121344247 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.95642 0.0 23.2673    
cufflinks 10.872 0.0 28.1276    
cufflinks 9.36166 0.0 24.2816    
cufflinks 5.277 0.0 14.1604   Low
cufflinks 7.83767 0.0 20.4953    
cufflinks 12.0767 0.0 31.218    
cufflinks 11.6437 0.0 30.1027    
cufflinks 17.7358 0.0 46.1326   High
cufflinks 10.2461 0.0 26.5372    
cufflinks 20.3599 0.0 53.184   High
cufflinks 8.92149 0.0 23.2035    

0 Strain