Gene : Phvul.011G092200 P. vulgaris v2.1
Defline:  (1 of 1) K09494 - T-complex protein 1 subunit beta (CCT2) Genomic Order:  926
Name:  ? Phvul.011G092200 Secondary Identifier:  ? PAC:37156150
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G092200 0.5kb upstream 0.5kb upstream 6691 true Chr11: 9158370-9165060 Phaseolus vulgaris
Phvul.011G092200 0.5kb upstream 0.5kb upstream 500 false Chr11: 9158370-9158869 Phaseolus vulgaris
Phvul.011G092200 0.5kb downstream 0.5kb downstream 6691 true Chr11: 9158870-9165560 Phaseolus vulgaris
Phvul.011G092200 0.5kb downstream 0.5kb downstream 500 false Chr11: 9165061-9165560 Phaseolus vulgaris
Phvul.011G092200 1.0kb upstream 1.0kb upstream 7191 true Chr11: 9157870-9165060 Phaseolus vulgaris
Phvul.011G092200 1.0kb upstream 1.0kb upstream 1000 false Chr11: 9157870-9158869 Phaseolus vulgaris
Phvul.011G092200 1.0kb downstream 1.0kb downstream 7191 true Chr11: 9158870-9166060 Phaseolus vulgaris
Phvul.011G092200 1.0kb downstream 1.0kb downstream 1000 false Chr11: 9165061-9166060 Phaseolus vulgaris
Phvul.011G092200 2.0kb upstream 2.0kb upstream 8191 true Chr11: 9156870-9165060 Phaseolus vulgaris
Phvul.011G092200 2.0kb upstream 2.0kb upstream 2000 false Chr11: 9156870-9158869 Phaseolus vulgaris
Phvul.011G092200 2.0kb downstream 2.0kb downstream 8191 true Chr11: 9158870-9167060 Phaseolus vulgaris
Phvul.011G092200 2.0kb downstream 2.0kb downstream 2000 false Chr11: 9165061-9167060 Phaseolus vulgaris
Phvul.011G092200 5.0kb upstream 5.0kb upstream 11191 true Chr11: 9153870-9165060 Phaseolus vulgaris
Phvul.011G092200 5.0kb upstream 5.0kb upstream 5000 false Chr11: 9153870-9158869 Phaseolus vulgaris
Phvul.011G092200 5.0kb downstream 5.0kb downstream 11191 true Chr11: 9158870-9170060 Phaseolus vulgaris
Phvul.011G092200 5.0kb downstream 5.0kb downstream 5000 false Chr11: 9165061-9170060 Phaseolus vulgaris
Phvul.011G092200 10.0kb upstream 10.0kb upstream 16191 true Chr11: 9148870-9165060 Phaseolus vulgaris
Phvul.011G092200 10.0kb upstream 10.0kb upstream 10000 false Chr11: 9148870-9158869 Phaseolus vulgaris
Phvul.011G092200 10.0kb downstream 10.0kb downstream 16191 true Chr11: 9158870-9175060 Phaseolus vulgaris
Phvul.011G092200 10.0kb downstream 10.0kb downstream 10000 false Chr11: 9165061-9175060 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315025 5265 Fabidae View MSA
124064073 5270 Rosid View MSA
123747286 5271 Pentapetalae View MSA
122790745 5272 Eudicot View MSA
122042218 5273 Angiosperm View MSA
121346616 5274 Embryophyte View MSA
123426772 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.7228 0.0 128.949 High Low
cufflinks 96.5349 0.0 280.939 High High
cufflinks 35.5007 0.0 93.7357   Low
cufflinks 74.5077 0.0 207.657 High  
cufflinks 92.2273 0.0 264.624 High  
cufflinks 50.0003 0.0 135.546 High  
cufflinks 75.9032 0.0 214.428 High  
cufflinks 68.8701 0.0 193.307 High  
cufflinks 91.1158 0.0 262.184 High  
cufflinks 59.0676 0.0 162.165 High  
cufflinks 94.7381 0.0 273.38 High  

0 Strain