Gene : Phvul.011G090800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR15319:SF1 - TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C Genomic Order:  910
Name:  ? Phvul.011G090800 Secondary Identifier:  ? PAC:37155849
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G090800 0.5kb upstream 0.5kb upstream 6221 true Chr11: 8937618-8943838 Phaseolus vulgaris
Phvul.011G090800 0.5kb upstream 0.5kb upstream 500 false Chr11: 8943339-8943838 Phaseolus vulgaris
Phvul.011G090800 0.5kb downstream 0.5kb downstream 6221 true Chr11: 8937118-8943338 Phaseolus vulgaris
Phvul.011G090800 0.5kb downstream 0.5kb downstream 500 false Chr11: 8937118-8937617 Phaseolus vulgaris
Phvul.011G090800 1.0kb upstream 1.0kb upstream 6721 true Chr11: 8937618-8944338 Phaseolus vulgaris
Phvul.011G090800 1.0kb upstream 1.0kb upstream 1000 false Chr11: 8943339-8944338 Phaseolus vulgaris
Phvul.011G090800 1.0kb downstream 1.0kb downstream 6721 true Chr11: 8936618-8943338 Phaseolus vulgaris
Phvul.011G090800 1.0kb downstream 1.0kb downstream 1000 false Chr11: 8936618-8937617 Phaseolus vulgaris
Phvul.011G090800 2.0kb upstream 2.0kb upstream 7721 true Chr11: 8937618-8945338 Phaseolus vulgaris
Phvul.011G090800 2.0kb upstream 2.0kb upstream 2000 false Chr11: 8943339-8945338 Phaseolus vulgaris
Phvul.011G090800 2.0kb downstream 2.0kb downstream 7721 true Chr11: 8935618-8943338 Phaseolus vulgaris
Phvul.011G090800 2.0kb downstream 2.0kb downstream 2000 false Chr11: 8935618-8937617 Phaseolus vulgaris
Phvul.011G090800 5.0kb upstream 5.0kb upstream 10721 true Chr11: 8937618-8948338 Phaseolus vulgaris
Phvul.011G090800 5.0kb upstream 5.0kb upstream 5000 false Chr11: 8943339-8948338 Phaseolus vulgaris
Phvul.011G090800 5.0kb downstream 5.0kb downstream 10721 true Chr11: 8932618-8943338 Phaseolus vulgaris
Phvul.011G090800 5.0kb downstream 5.0kb downstream 5000 false Chr11: 8932618-8937617 Phaseolus vulgaris
Phvul.011G090800 10.0kb upstream 10.0kb upstream 15721 true Chr11: 8937618-8953338 Phaseolus vulgaris
Phvul.011G090800 10.0kb upstream 10.0kb upstream 10000 false Chr11: 8943339-8953338 Phaseolus vulgaris
Phvul.011G090800 10.0kb downstream 10.0kb downstream 15721 true Chr11: 8927618-8943338 Phaseolus vulgaris
Phvul.011G090800 10.0kb downstream 10.0kb downstream 10000 false Chr11: 8927618-8937617 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306825 5265 Fabidae View MSA
124067598 5270 Rosid View MSA
123740650 5271 Pentapetalae View MSA
122790437 5272 Eudicot View MSA
122049864 5273 Angiosperm View MSA
121348970 5274 Embryophyte View MSA
123381106 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.08025 0.0 5.48838   Low
cufflinks 2.39036 0.0 8.13612    
cufflinks 3.58621 0.0 17.7981   High
cufflinks 1.17122 0.0 3.88368   Low
cufflinks 2.25742 0.0 7.98369    
cufflinks 4.62366 0.0 24.7916   High
cufflinks 2.35492 0.0 9.62495    
cufflinks 1.72768 0.0 7.61742    
cufflinks 2.67534 0.0 10.8785    
cufflinks 3.03451 0.0 19.4981    
cufflinks 1.73022 0.0 7.9709    

0 Strain