Gene : Phvul.011G086300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10003:SF34 - SUPEROXIDE DISMUTASE [CU-ZN] 2, CHLOROPLASTIC Genomic Order:  867
Name:  ? Phvul.011G086300 Secondary Identifier:  ? PAC:37155526
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris DETOX1-PWY Phaseolus vulgaris pathologic  
Pvulgaris DETOX1-PWY-1 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G086300 0.5kb upstream 0.5kb upstream 5567 true Chr11: 8222418-8227984 Phaseolus vulgaris
Phvul.011G086300 0.5kb upstream 0.5kb upstream 500 false Chr11: 8222418-8222917 Phaseolus vulgaris
Phvul.011G086300 0.5kb downstream 0.5kb downstream 5567 true Chr11: 8222918-8228484 Phaseolus vulgaris
Phvul.011G086300 0.5kb downstream 0.5kb downstream 500 false Chr11: 8227985-8228484 Phaseolus vulgaris
Phvul.011G086300 1.0kb upstream 1.0kb upstream 6067 true Chr11: 8221918-8227984 Phaseolus vulgaris
Phvul.011G086300 1.0kb upstream 1.0kb upstream 1000 false Chr11: 8221918-8222917 Phaseolus vulgaris
Phvul.011G086300 1.0kb downstream 1.0kb downstream 6067 true Chr11: 8222918-8228984 Phaseolus vulgaris
Phvul.011G086300 1.0kb downstream 1.0kb downstream 1000 false Chr11: 8227985-8228984 Phaseolus vulgaris
Phvul.011G086300 2.0kb upstream 2.0kb upstream 7067 true Chr11: 8220918-8227984 Phaseolus vulgaris
Phvul.011G086300 2.0kb upstream 2.0kb upstream 2000 false Chr11: 8220918-8222917 Phaseolus vulgaris
Phvul.011G086300 2.0kb downstream 2.0kb downstream 7067 true Chr11: 8222918-8229984 Phaseolus vulgaris
Phvul.011G086300 2.0kb downstream 2.0kb downstream 2000 false Chr11: 8227985-8229984 Phaseolus vulgaris
Phvul.011G086300 5.0kb upstream 5.0kb upstream 10067 true Chr11: 8217918-8227984 Phaseolus vulgaris
Phvul.011G086300 5.0kb upstream 5.0kb upstream 5000 false Chr11: 8217918-8222917 Phaseolus vulgaris
Phvul.011G086300 5.0kb downstream 5.0kb downstream 10067 true Chr11: 8222918-8232984 Phaseolus vulgaris
Phvul.011G086300 5.0kb downstream 5.0kb downstream 5000 false Chr11: 8227985-8232984 Phaseolus vulgaris
Phvul.011G086300 10.0kb upstream 10.0kb upstream 15067 true Chr11: 8212918-8227984 Phaseolus vulgaris
Phvul.011G086300 10.0kb upstream 10.0kb upstream 10000 false Chr11: 8212918-8222917 Phaseolus vulgaris
Phvul.011G086300 10.0kb downstream 10.0kb downstream 15067 true Chr11: 8222918-8237984 Phaseolus vulgaris
Phvul.011G086300 10.0kb downstream 10.0kb downstream 10000 false Chr11: 8227985-8237984 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299889 5265 Fabidae View MSA
124067425 5270 Rosid View MSA
123737273 5271 Pentapetalae View MSA
122788875 5272 Eudicot View MSA
122047736 5273 Angiosperm View MSA
121347419 5274 Embryophyte View MSA
123427939 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 56.372 0.0 146.264 High  
cufflinks 150.559 0.0 416.854 High  
cufflinks 402.251 0.0 1274.05 High High
cufflinks 94.8114 0.0 252.733 High  
cufflinks 124.286 0.0 338.673 High  
cufflinks 321.021 0.0 979.117 High High
cufflinks 24.1407 0.0 63.2345   Low
cufflinks 33.8266 0.0 87.6556 High  
cufflinks 35.5579 0.0 92.0374 High  
cufflinks 30.7253 0.0 79.8839   Low
cufflinks 87.7141 0.0 232.274 High  

0 Strain