Gene : Phvul.011G211200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10543:SF37 - CAROTENOID 9,10(9',10')-CLEAVAGE DIOXYGENASE 1 Genomic Order:  2106
Name:  ? Phvul.011G211200 Secondary Identifier:  ? PAC:37156219
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G211200 0.5kb upstream 0.5kb upstream 7228 true Chr11: 53072815-53080042 Phaseolus vulgaris
Phvul.011G211200 0.5kb upstream 0.5kb upstream 500 false Chr11: 53072815-53073314 Phaseolus vulgaris
Phvul.011G211200 0.5kb downstream 0.5kb downstream 7228 true Chr11: 53073315-53080542 Phaseolus vulgaris
Phvul.011G211200 0.5kb downstream 0.5kb downstream 500 false Chr11: 53080043-53080542 Phaseolus vulgaris
Phvul.011G211200 1.0kb upstream 1.0kb upstream 7728 true Chr11: 53072315-53080042 Phaseolus vulgaris
Phvul.011G211200 1.0kb upstream 1.0kb upstream 1000 false Chr11: 53072315-53073314 Phaseolus vulgaris
Phvul.011G211200 1.0kb downstream 1.0kb downstream 7728 true Chr11: 53073315-53081042 Phaseolus vulgaris
Phvul.011G211200 1.0kb downstream 1.0kb downstream 1000 false Chr11: 53080043-53081042 Phaseolus vulgaris
Phvul.011G211200 2.0kb upstream 2.0kb upstream 8728 true Chr11: 53071315-53080042 Phaseolus vulgaris
Phvul.011G211200 2.0kb upstream 2.0kb upstream 2000 false Chr11: 53071315-53073314 Phaseolus vulgaris
Phvul.011G211200 2.0kb downstream 2.0kb downstream 8728 true Chr11: 53073315-53082042 Phaseolus vulgaris
Phvul.011G211200 2.0kb downstream 2.0kb downstream 2000 false Chr11: 53080043-53082042 Phaseolus vulgaris
Phvul.011G211200 5.0kb upstream 5.0kb upstream 11728 true Chr11: 53068315-53080042 Phaseolus vulgaris
Phvul.011G211200 5.0kb upstream 5.0kb upstream 5000 false Chr11: 53068315-53073314 Phaseolus vulgaris
Phvul.011G211200 5.0kb downstream 5.0kb downstream 11728 true Chr11: 53073315-53085042 Phaseolus vulgaris
Phvul.011G211200 5.0kb downstream 5.0kb downstream 5000 false Chr11: 53080043-53085042 Phaseolus vulgaris
Phvul.011G211200 10.0kb upstream 10.0kb upstream 16728 true Chr11: 53063315-53080042 Phaseolus vulgaris
Phvul.011G211200 10.0kb upstream 10.0kb upstream 10000 false Chr11: 53063315-53073314 Phaseolus vulgaris
Phvul.011G211200 10.0kb downstream 10.0kb downstream 16728 true Chr11: 53073315-53090042 Phaseolus vulgaris
Phvul.011G211200 10.0kb downstream 10.0kb downstream 10000 false Chr11: 53080043-53090042 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305426 5265 Fabidae View MSA
124065010 5270 Rosid View MSA
123749061 5271 Pentapetalae View MSA
122787138 5272 Eudicot View MSA
122045403 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.0192 0.0 110.85 High  
cufflinks 27.3482 0.0 70.8207    
cufflinks 60.1688 0.0 163.583 High High
cufflinks 30.1165 0.0 78.0248    
cufflinks 30.9246 0.0 80.2079    
cufflinks 30.7033 0.0 79.7546    
cufflinks 10.2881 0.0 27.3347   Low
cufflinks 12.532 0.0 32.8117   Low
cufflinks 15.286 0.0 39.796    
cufflinks 117.893 0.0 343.091 High High
cufflinks 23.7581 0.0 61.4107    

0 Strain