Gene : Phvul.011G212200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR15107 - RETINOBLASTOMA BINDING PROTEIN 8 Genomic Order:  2117
Name:  ? Phvul.011G212200 Secondary Identifier:  ? PAC:37154823
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G212200 0.5kb upstream 0.5kb upstream 4166 true Chr11: 53232572-53236737 Phaseolus vulgaris
Phvul.011G212200 0.5kb upstream 0.5kb upstream 500 false Chr11: 53236238-53236737 Phaseolus vulgaris
Phvul.011G212200 0.5kb downstream 0.5kb downstream 4166 true Chr11: 53232072-53236237 Phaseolus vulgaris
Phvul.011G212200 0.5kb downstream 0.5kb downstream 500 false Chr11: 53232072-53232571 Phaseolus vulgaris
Phvul.011G212200 1.0kb upstream 1.0kb upstream 4666 true Chr11: 53232572-53237237 Phaseolus vulgaris
Phvul.011G212200 1.0kb upstream 1.0kb upstream 1000 false Chr11: 53236238-53237237 Phaseolus vulgaris
Phvul.011G212200 1.0kb downstream 1.0kb downstream 4666 true Chr11: 53231572-53236237 Phaseolus vulgaris
Phvul.011G212200 1.0kb downstream 1.0kb downstream 1000 false Chr11: 53231572-53232571 Phaseolus vulgaris
Phvul.011G212200 2.0kb upstream 2.0kb upstream 5666 true Chr11: 53232572-53238237 Phaseolus vulgaris
Phvul.011G212200 2.0kb upstream 2.0kb upstream 2000 false Chr11: 53236238-53238237 Phaseolus vulgaris
Phvul.011G212200 2.0kb downstream 2.0kb downstream 5666 true Chr11: 53230572-53236237 Phaseolus vulgaris
Phvul.011G212200 2.0kb downstream 2.0kb downstream 2000 false Chr11: 53230572-53232571 Phaseolus vulgaris
Phvul.011G212200 5.0kb upstream 5.0kb upstream 8666 true Chr11: 53232572-53241237 Phaseolus vulgaris
Phvul.011G212200 5.0kb upstream 5.0kb upstream 5000 false Chr11: 53236238-53241237 Phaseolus vulgaris
Phvul.011G212200 5.0kb downstream 5.0kb downstream 8666 true Chr11: 53227572-53236237 Phaseolus vulgaris
Phvul.011G212200 5.0kb downstream 5.0kb downstream 5000 false Chr11: 53227572-53232571 Phaseolus vulgaris
Phvul.011G212200 10.0kb upstream 10.0kb upstream 13666 true Chr11: 53232572-53246237 Phaseolus vulgaris
Phvul.011G212200 10.0kb upstream 10.0kb upstream 10000 false Chr11: 53236238-53246237 Phaseolus vulgaris
Phvul.011G212200 10.0kb downstream 10.0kb downstream 13666 true Chr11: 53222572-53236237 Phaseolus vulgaris
Phvul.011G212200 10.0kb downstream 10.0kb downstream 10000 false Chr11: 53222572-53232571 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313055 5265 Fabidae View MSA
124062434 5270 Rosid View MSA
123738762 5271 Pentapetalae View MSA
122791148 5272 Eudicot View MSA
122042874 5273 Angiosperm View MSA
121349067 5274 Embryophyte View MSA
123426069 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.84199 0.0 6.16453   Low
cufflinks 2.47543 0.0 7.86635    
cufflinks 2.14497 0.0 8.84807    
cufflinks 2.40323 0.0 7.66824    
cufflinks 3.24235 0.0 12.034    
cufflinks 3.56931 0.0 12.6792   High
cufflinks 3.34802 0.0 11.9299    
cufflinks 3.70324 0.0 15.2947   High
cufflinks 2.05543 0.0 8.38277    
cufflinks 2.00357 0.0 8.28709   Low
cufflinks 3.52807 0.0 12.4211   High

0 Strain