Gene : Phvul.011G213300 P. vulgaris v2.1
Defline:  (1 of 3) PTHR14155:SF75 - E3 UBIQUITIN LIGASE BIG BROTHER Genomic Order:  2127
Name:  ? Phvul.011G213300 Secondary Identifier:  ? PAC:37157066
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G213300 0.5kb upstream 0.5kb upstream 6516 true Chr11: 53301835-53308350 Phaseolus vulgaris
Phvul.011G213300 0.5kb upstream 0.5kb upstream 500 false Chr11: 53301835-53302334 Phaseolus vulgaris
Phvul.011G213300 0.5kb downstream 0.5kb downstream 6516 true Chr11: 53302335-53308850 Phaseolus vulgaris
Phvul.011G213300 0.5kb downstream 0.5kb downstream 500 false Chr11: 53308351-53308850 Phaseolus vulgaris
Phvul.011G213300 1.0kb upstream 1.0kb upstream 7016 true Chr11: 53301335-53308350 Phaseolus vulgaris
Phvul.011G213300 1.0kb upstream 1.0kb upstream 1000 false Chr11: 53301335-53302334 Phaseolus vulgaris
Phvul.011G213300 1.0kb downstream 1.0kb downstream 7016 true Chr11: 53302335-53309350 Phaseolus vulgaris
Phvul.011G213300 1.0kb downstream 1.0kb downstream 1000 false Chr11: 53308351-53309350 Phaseolus vulgaris
Phvul.011G213300 2.0kb upstream 2.0kb upstream 8016 true Chr11: 53300335-53308350 Phaseolus vulgaris
Phvul.011G213300 2.0kb upstream 2.0kb upstream 2000 false Chr11: 53300335-53302334 Phaseolus vulgaris
Phvul.011G213300 2.0kb downstream 2.0kb downstream 8016 true Chr11: 53302335-53310350 Phaseolus vulgaris
Phvul.011G213300 2.0kb downstream 2.0kb downstream 2000 false Chr11: 53308351-53310350 Phaseolus vulgaris
Phvul.011G213300 5.0kb upstream 5.0kb upstream 11016 true Chr11: 53297335-53308350 Phaseolus vulgaris
Phvul.011G213300 5.0kb upstream 5.0kb upstream 5000 false Chr11: 53297335-53302334 Phaseolus vulgaris
Phvul.011G213300 5.0kb downstream 5.0kb downstream 11016 true Chr11: 53302335-53313350 Phaseolus vulgaris
Phvul.011G213300 5.0kb downstream 5.0kb downstream 5000 false Chr11: 53308351-53313350 Phaseolus vulgaris
Phvul.011G213300 10.0kb upstream 10.0kb upstream 16016 true Chr11: 53292335-53308350 Phaseolus vulgaris
Phvul.011G213300 10.0kb upstream 10.0kb upstream 10000 false Chr11: 53292335-53302334 Phaseolus vulgaris
Phvul.011G213300 10.0kb downstream 10.0kb downstream 16016 true Chr11: 53302335-53318350 Phaseolus vulgaris
Phvul.011G213300 10.0kb downstream 10.0kb downstream 10000 false Chr11: 53308351-53318350 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313897 5265 Fabidae View MSA
124069902 5270 Rosid View MSA
123752046 5271 Pentapetalae View MSA
122792578 5272 Eudicot View MSA
122048358 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121310941 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.52638 0.0 29.3868    
cufflinks 14.691 0.0 45.8596    
cufflinks 32.8642 0.0 92.0165   High
cufflinks 11.3976 0.0 37.4374    
cufflinks 8.14222 0.0 38.0528    
cufflinks 13.252 0.0 55.3653    
cufflinks 6.23478 0.0 23.0471   Low
cufflinks 8.51251 0.0 39.4915    
cufflinks 4.86461 0.0 15.5653   Low
cufflinks 11.5893 0.0 37.5985    
cufflinks 10.6718 0.0 35.4584    

0 Strain