Gene : Phvul.011G196500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10252//PTHR10252:SF40 - HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1956
Name:  ? Phvul.011G196500 Secondary Identifier:  ? PAC:37156833
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G196500 0.5kb upstream 0.5kb upstream 5043 true Chr11: 51037416-51042458 Phaseolus vulgaris
Phvul.011G196500 0.5kb upstream 0.5kb upstream 500 false Chr11: 51037416-51037915 Phaseolus vulgaris
Phvul.011G196500 0.5kb downstream 0.5kb downstream 5043 true Chr11: 51037916-51042958 Phaseolus vulgaris
Phvul.011G196500 0.5kb downstream 0.5kb downstream 500 false Chr11: 51042459-51042958 Phaseolus vulgaris
Phvul.011G196500 1.0kb upstream 1.0kb upstream 5543 true Chr11: 51036916-51042458 Phaseolus vulgaris
Phvul.011G196500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 51036916-51037915 Phaseolus vulgaris
Phvul.011G196500 1.0kb downstream 1.0kb downstream 5543 true Chr11: 51037916-51043458 Phaseolus vulgaris
Phvul.011G196500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 51042459-51043458 Phaseolus vulgaris
Phvul.011G196500 2.0kb upstream 2.0kb upstream 6543 true Chr11: 51035916-51042458 Phaseolus vulgaris
Phvul.011G196500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 51035916-51037915 Phaseolus vulgaris
Phvul.011G196500 2.0kb downstream 2.0kb downstream 6543 true Chr11: 51037916-51044458 Phaseolus vulgaris
Phvul.011G196500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 51042459-51044458 Phaseolus vulgaris
Phvul.011G196500 5.0kb upstream 5.0kb upstream 9543 true Chr11: 51032916-51042458 Phaseolus vulgaris
Phvul.011G196500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 51032916-51037915 Phaseolus vulgaris
Phvul.011G196500 5.0kb downstream 5.0kb downstream 9543 true Chr11: 51037916-51047458 Phaseolus vulgaris
Phvul.011G196500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 51042459-51047458 Phaseolus vulgaris
Phvul.011G196500 10.0kb upstream 10.0kb upstream 14543 true Chr11: 51027916-51042458 Phaseolus vulgaris
Phvul.011G196500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 51027916-51037915 Phaseolus vulgaris
Phvul.011G196500 10.0kb downstream 10.0kb downstream 14543 true Chr11: 51037916-51052458 Phaseolus vulgaris
Phvul.011G196500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 51042459-51052458 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309450 5265 Fabidae View MSA
124069286 5270 Rosid View MSA
123742462 5271 Pentapetalae View MSA
122792661 5272 Eudicot View MSA
122049084 5273 Angiosperm View MSA
123429029 5275 Viridiplantae View MSA
121345521 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.9399 0.0 72.2211    
cufflinks 31.3214 0.0 81.0154   High
cufflinks 18.8354 0.0 48.97   Low
cufflinks 22.8358 0.0 59.2298    
cufflinks 20.6037 0.0 53.5406    
cufflinks 23.5043 0.0 60.8097    
cufflinks 21.3219 0.0 55.2336    
cufflinks 21.08 0.0 54.6116    
cufflinks 18.7246 0.0 48.716   Low
cufflinks 30.6876 0.0 79.3515   High
cufflinks 28.602 0.0 73.9307    

0 Strain