Gene : Phvul.011G179100 P. vulgaris v2.1
Defline:  (1 of 1) 2.1.1.191 - 23S rRNA (cytosine(1962)-C(5))-methyltransferase / rRNA large subunit methyltransferase I Genomic Order:  1776
Name:  ? Phvul.011G179100 Secondary Identifier:  ? PAC:37155660
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G179100 0.5kb upstream 0.5kb upstream 7996 true Chr11: 49023598-49031593 Phaseolus vulgaris
Phvul.011G179100 0.5kb upstream 0.5kb upstream 500 false Chr11: 49023598-49024097 Phaseolus vulgaris
Phvul.011G179100 0.5kb downstream 0.5kb downstream 7996 true Chr11: 49024098-49032093 Phaseolus vulgaris
Phvul.011G179100 0.5kb downstream 0.5kb downstream 500 false Chr11: 49031594-49032093 Phaseolus vulgaris
Phvul.011G179100 1.0kb upstream 1.0kb upstream 8496 true Chr11: 49023098-49031593 Phaseolus vulgaris
Phvul.011G179100 1.0kb upstream 1.0kb upstream 1000 false Chr11: 49023098-49024097 Phaseolus vulgaris
Phvul.011G179100 1.0kb downstream 1.0kb downstream 8496 true Chr11: 49024098-49032593 Phaseolus vulgaris
Phvul.011G179100 1.0kb downstream 1.0kb downstream 1000 false Chr11: 49031594-49032593 Phaseolus vulgaris
Phvul.011G179100 2.0kb upstream 2.0kb upstream 9496 true Chr11: 49022098-49031593 Phaseolus vulgaris
Phvul.011G179100 2.0kb upstream 2.0kb upstream 2000 false Chr11: 49022098-49024097 Phaseolus vulgaris
Phvul.011G179100 2.0kb downstream 2.0kb downstream 9496 true Chr11: 49024098-49033593 Phaseolus vulgaris
Phvul.011G179100 2.0kb downstream 2.0kb downstream 2000 false Chr11: 49031594-49033593 Phaseolus vulgaris
Phvul.011G179100 5.0kb upstream 5.0kb upstream 12496 true Chr11: 49019098-49031593 Phaseolus vulgaris
Phvul.011G179100 5.0kb upstream 5.0kb upstream 5000 false Chr11: 49019098-49024097 Phaseolus vulgaris
Phvul.011G179100 5.0kb downstream 5.0kb downstream 12496 true Chr11: 49024098-49036593 Phaseolus vulgaris
Phvul.011G179100 5.0kb downstream 5.0kb downstream 5000 false Chr11: 49031594-49036593 Phaseolus vulgaris
Phvul.011G179100 10.0kb upstream 10.0kb upstream 17496 true Chr11: 49014098-49031593 Phaseolus vulgaris
Phvul.011G179100 10.0kb upstream 10.0kb upstream 10000 false Chr11: 49014098-49024097 Phaseolus vulgaris
Phvul.011G179100 10.0kb downstream 10.0kb downstream 17496 true Chr11: 49024098-49041593 Phaseolus vulgaris
Phvul.011G179100 10.0kb downstream 10.0kb downstream 10000 false Chr11: 49031594-49041593 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301111 5265 Fabidae View MSA
124063460 5270 Rosid View MSA
123739745 5271 Pentapetalae View MSA
122788852 5272 Eudicot View MSA
122042200 5273 Angiosperm View MSA
121348163 5274 Embryophyte View MSA
123426103 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.58851 0.0 10.8461    
cufflinks 2.56443 0.0 10.8122    
cufflinks 8.80468 0.0 31.9543   High
cufflinks 3.34486 0.0 13.4735    
cufflinks 2.57952 0.0 11.2209    
cufflinks 6.89395 0.0 26.4327   High
cufflinks 2.23117 0.0 9.75875    
cufflinks 2.63839 0.0 10.8859    
cufflinks 1.9921 0.0 9.11284    
cufflinks 2.96472 0.0 12.0407    
cufflinks 1.99884 0.0 9.11687    

0 Strain