Gene : Phvul.011G187200 P. vulgaris v2.1
Defline:  (1 of 16) PF03101//PF04434//PF10551 - FAR1 DNA-binding domain (FAR1) // SWIM zinc finger (SWIM) // MULE transposase domain (MULE) Genomic Order:  1861
Name:  ? Phvul.011G187200 Secondary Identifier:  ? PAC:37156719
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G187200 0.5kb upstream 0.5kb upstream 6583 true Chr11: 50063654-50070236 Phaseolus vulgaris
Phvul.011G187200 0.5kb upstream 0.5kb upstream 500 false Chr11: 50069737-50070236 Phaseolus vulgaris
Phvul.011G187200 0.5kb downstream 0.5kb downstream 6583 true Chr11: 50063154-50069736 Phaseolus vulgaris
Phvul.011G187200 0.5kb downstream 0.5kb downstream 500 false Chr11: 50063154-50063653 Phaseolus vulgaris
Phvul.011G187200 1.0kb upstream 1.0kb upstream 7083 true Chr11: 50063654-50070736 Phaseolus vulgaris
Phvul.011G187200 1.0kb upstream 1.0kb upstream 1000 false Chr11: 50069737-50070736 Phaseolus vulgaris
Phvul.011G187200 1.0kb downstream 1.0kb downstream 7083 true Chr11: 50062654-50069736 Phaseolus vulgaris
Phvul.011G187200 1.0kb downstream 1.0kb downstream 1000 false Chr11: 50062654-50063653 Phaseolus vulgaris
Phvul.011G187200 2.0kb upstream 2.0kb upstream 8083 true Chr11: 50063654-50071736 Phaseolus vulgaris
Phvul.011G187200 2.0kb upstream 2.0kb upstream 2000 false Chr11: 50069737-50071736 Phaseolus vulgaris
Phvul.011G187200 2.0kb downstream 2.0kb downstream 8083 true Chr11: 50061654-50069736 Phaseolus vulgaris
Phvul.011G187200 2.0kb downstream 2.0kb downstream 2000 false Chr11: 50061654-50063653 Phaseolus vulgaris
Phvul.011G187200 5.0kb upstream 5.0kb upstream 11083 true Chr11: 50063654-50074736 Phaseolus vulgaris
Phvul.011G187200 5.0kb upstream 5.0kb upstream 5000 false Chr11: 50069737-50074736 Phaseolus vulgaris
Phvul.011G187200 5.0kb downstream 5.0kb downstream 11083 true Chr11: 50058654-50069736 Phaseolus vulgaris
Phvul.011G187200 5.0kb downstream 5.0kb downstream 5000 false Chr11: 50058654-50063653 Phaseolus vulgaris
Phvul.011G187200 10.0kb upstream 10.0kb upstream 16083 true Chr11: 50063654-50079736 Phaseolus vulgaris
Phvul.011G187200 10.0kb upstream 10.0kb upstream 10000 false Chr11: 50069737-50079736 Phaseolus vulgaris
Phvul.011G187200 10.0kb downstream 10.0kb downstream 16083 true Chr11: 50053654-50069736 Phaseolus vulgaris
Phvul.011G187200 10.0kb downstream 10.0kb downstream 10000 false Chr11: 50053654-50063653 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305943 5265 Fabidae View MSA
124064259 5270 Rosid View MSA
123753434 5271 Pentapetalae View MSA
122797932 5272 Eudicot View MSA
122051679 5273 Angiosperm View MSA
121351767 5274 Embryophyte View MSA
123382313 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.495439 0.0 1.73144   Low
cufflinks 2.73975 0.0 7.90651    
cufflinks 4.07246 0.0 11.2687   High
cufflinks 1.0129 0.0 3.29925    
cufflinks 1.25354 0.0 3.99684    
cufflinks 4.25848 0.0 11.771   High
cufflinks 0.836414 0.0 2.76451    
cufflinks 1.42205 0.0 4.39122    
cufflinks 0.593208 0.0 2.04226   Low
cufflinks 1.97328 0.0 5.92041    
cufflinks 1.52829 0.0 4.75725    

0 Strain