Gene : Phvul.011G168100 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10791//PTHR10791:SF57 - RAG1-ACTIVATING PROTEIN 1 // SUBFAMILY NOT NAMED Genomic Order:  1661
Name:  ? Phvul.011G168100 Secondary Identifier:  ? PAC:37155040
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G168100 0.5kb upstream 0.5kb upstream 2368 true Chr11: 47316177-47318544 Phaseolus vulgaris
Phvul.011G168100 0.5kb upstream 0.5kb upstream 500 false Chr11: 47318045-47318544 Phaseolus vulgaris
Phvul.011G168100 0.5kb downstream 0.5kb downstream 2368 true Chr11: 47315677-47318044 Phaseolus vulgaris
Phvul.011G168100 0.5kb downstream 0.5kb downstream 500 false Chr11: 47315677-47316176 Phaseolus vulgaris
Phvul.011G168100 1.0kb upstream 1.0kb upstream 2868 true Chr11: 47316177-47319044 Phaseolus vulgaris
Phvul.011G168100 1.0kb upstream 1.0kb upstream 1000 false Chr11: 47318045-47319044 Phaseolus vulgaris
Phvul.011G168100 1.0kb downstream 1.0kb downstream 2868 true Chr11: 47315177-47318044 Phaseolus vulgaris
Phvul.011G168100 1.0kb downstream 1.0kb downstream 1000 false Chr11: 47315177-47316176 Phaseolus vulgaris
Phvul.011G168100 2.0kb upstream 2.0kb upstream 3868 true Chr11: 47316177-47320044 Phaseolus vulgaris
Phvul.011G168100 2.0kb upstream 2.0kb upstream 2000 false Chr11: 47318045-47320044 Phaseolus vulgaris
Phvul.011G168100 2.0kb downstream 2.0kb downstream 3868 true Chr11: 47314177-47318044 Phaseolus vulgaris
Phvul.011G168100 2.0kb downstream 2.0kb downstream 2000 false Chr11: 47314177-47316176 Phaseolus vulgaris
Phvul.011G168100 5.0kb upstream 5.0kb upstream 6868 true Chr11: 47316177-47323044 Phaseolus vulgaris
Phvul.011G168100 5.0kb upstream 5.0kb upstream 5000 false Chr11: 47318045-47323044 Phaseolus vulgaris
Phvul.011G168100 5.0kb downstream 5.0kb downstream 6868 true Chr11: 47311177-47318044 Phaseolus vulgaris
Phvul.011G168100 5.0kb downstream 5.0kb downstream 5000 false Chr11: 47311177-47316176 Phaseolus vulgaris
Phvul.011G168100 10.0kb upstream 10.0kb upstream 11868 true Chr11: 47316177-47328044 Phaseolus vulgaris
Phvul.011G168100 10.0kb upstream 10.0kb upstream 10000 false Chr11: 47318045-47328044 Phaseolus vulgaris
Phvul.011G168100 10.0kb downstream 10.0kb downstream 11868 true Chr11: 47306177-47318044 Phaseolus vulgaris
Phvul.011G168100 10.0kb downstream 10.0kb downstream 10000 false Chr11: 47306177-47316176 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311090 5265 Fabidae View MSA
124072962 5270 Rosid View MSA
123749486 5271 Pentapetalae View MSA
122796562 5272 Eudicot View MSA
122048091 5273 Angiosperm View MSA
121310847 5274 Embryophyte View MSA
123348232 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.92855 0.0 17.7054   High
cufflinks 4.86561 0.0 14.9448    
cufflinks 1.06443 0.0 3.84392   Low
cufflinks 5.82951 0.0 17.7057   High
cufflinks 3.98627 0.0 12.6034    
cufflinks 3.06607 0.0 9.91955    
cufflinks 2.49141 0.0 8.29213    
cufflinks 2.37625 0.0 7.87948    
cufflinks 4.81001 0.0 14.9294    
cufflinks 3.13573 0.0 10.132    
cufflinks 3.95472 0.0 12.5304    

0 Strain