Gene : Phvul.L001661 P. vulgaris v2.1
Defline:  (1 of 4) 3.1.4.3 - Phospholipase C / Lipophosphodiesterase I Genomic Order:  1
Name:  ? Phvul.L001661 Secondary Identifier:  ? PAC:37148438
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris LIPASYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L001661 0.5kb upstream 0.5kb upstream 4217 true scaffold_293: 3783-7999 Phaseolus vulgaris
Phvul.L001661 0.5kb upstream 0.5kb upstream 500 false scaffold_293: 7500-7999 Phaseolus vulgaris
Phvul.L001661 0.5kb downstream 0.5kb downstream 4217 true scaffold_293: 3283-7499 Phaseolus vulgaris
Phvul.L001661 0.5kb downstream 0.5kb downstream 500 false scaffold_293: 3283-3782 Phaseolus vulgaris
Phvul.L001661 1.0kb upstream 1.0kb upstream 4717 true scaffold_293: 3783-8499 Phaseolus vulgaris
Phvul.L001661 1.0kb upstream 1.0kb upstream 1000 false scaffold_293: 7500-8499 Phaseolus vulgaris
Phvul.L001661 1.0kb downstream 1.0kb downstream 4717 true scaffold_293: 2783-7499 Phaseolus vulgaris
Phvul.L001661 1.0kb downstream 1.0kb downstream 1000 false scaffold_293: 2783-3782 Phaseolus vulgaris
Phvul.L001661 2.0kb upstream 2.0kb upstream 5717 true scaffold_293: 3783-9499 Phaseolus vulgaris
Phvul.L001661 2.0kb upstream 2.0kb upstream 2000 false scaffold_293: 7500-9499 Phaseolus vulgaris
Phvul.L001661 2.0kb downstream 2.0kb downstream 5717 true scaffold_293: 1783-7499 Phaseolus vulgaris
Phvul.L001661 2.0kb downstream 2.0kb downstream 2000 false scaffold_293: 1783-3782 Phaseolus vulgaris
Phvul.L001661 5.0kb upstream 5.0kb upstream 8717 true scaffold_293: 3783-12499 Phaseolus vulgaris
Phvul.L001661 5.0kb upstream 5.0kb upstream 5000 false scaffold_293: 7500-12499 Phaseolus vulgaris
Phvul.L001661 5.0kb downstream 5.0kb downstream 7499 true scaffold_293: 1-7499 Phaseolus vulgaris
Phvul.L001661 5.0kb downstream 5.0kb downstream 3782 false scaffold_293: 1-3782 Phaseolus vulgaris
Phvul.L001661 10.0kb upstream 10.0kb upstream 13717 true scaffold_293: 3783-17499 Phaseolus vulgaris
Phvul.L001661 10.0kb upstream 10.0kb upstream 10000 false scaffold_293: 7500-17499 Phaseolus vulgaris
Phvul.L001661 10.0kb downstream 10.0kb downstream 7499 true scaffold_293: 1-7499 Phaseolus vulgaris
Phvul.L001661 10.0kb downstream 10.0kb downstream 3782 false scaffold_293: 1-3782 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253348 5265 Fabidae Singleton cluster - no MSA
123995942 5270 Rosid Singleton cluster - no MSA
123747870 5271 Pentapetalae View MSA
122794639 5272 Eudicot View MSA
122048233 5273 Angiosperm View MSA
121345811 5274 Embryophyte View MSA
123380272 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 57.8428 0.0 153.628 High High
cufflinks 25.7268 0.0 66.5252    
cufflinks 25.2539 0.0 65.3318    
cufflinks 22.4535 0.0 58.0758    
cufflinks 37.1857 0.0 96.761 High  
cufflinks 21.0831 0.0 54.6951    
cufflinks 21.6552 0.0 56.0358    
cufflinks 12.1748 0.0 32.4594   Low
cufflinks 20.6415 0.0 53.4755    
cufflinks 90.0533 0.0 247.48 High High
cufflinks 44.0195 0.0 115.154 High  

0 Strain