Gene : Zm00008a039320 Z. mays PH207 v1.1
Defline:  (1 of 3) PF00078//PF00665//PF03732//PF13456 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retrotransposon gag protein (Retrotrans_gag) // Reverse transcriptase-like (RVT_3) Genomic Order:  381
Name:  ? Zm00008a039320 Secondary Identifier:  ? PAC:37216013
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Zm00008a039320 0.5kb upstream 0.5kb upstream 16903 true chrUNKNOWN: 4503379-4520281 Zea mays PH207
Zm00008a039320 0.5kb upstream 0.5kb upstream 500 false chrUNKNOWN: 4503379-4503878 Zea mays PH207
Zm00008a039320 0.5kb downstream 0.5kb downstream 16903 true chrUNKNOWN: 4503879-4520781 Zea mays PH207
Zm00008a039320 0.5kb downstream 0.5kb downstream 500 false chrUNKNOWN: 4520282-4520781 Zea mays PH207
Zm00008a039320 1.0kb upstream 1.0kb upstream 17403 true chrUNKNOWN: 4502879-4520281 Zea mays PH207
Zm00008a039320 1.0kb upstream 1.0kb upstream 1000 false chrUNKNOWN: 4502879-4503878 Zea mays PH207
Zm00008a039320 1.0kb downstream 1.0kb downstream 17403 true chrUNKNOWN: 4503879-4521281 Zea mays PH207
Zm00008a039320 1.0kb downstream 1.0kb downstream 1000 false chrUNKNOWN: 4520282-4521281 Zea mays PH207
Zm00008a039320 2.0kb upstream 2.0kb upstream 18403 true chrUNKNOWN: 4501879-4520281 Zea mays PH207
Zm00008a039320 2.0kb upstream 2.0kb upstream 2000 false chrUNKNOWN: 4501879-4503878 Zea mays PH207
Zm00008a039320 2.0kb downstream 2.0kb downstream 18403 true chrUNKNOWN: 4503879-4522281 Zea mays PH207
Zm00008a039320 2.0kb downstream 2.0kb downstream 2000 false chrUNKNOWN: 4520282-4522281 Zea mays PH207
Zm00008a039320 5.0kb upstream 5.0kb upstream 21403 true chrUNKNOWN: 4498879-4520281 Zea mays PH207
Zm00008a039320 5.0kb upstream 5.0kb upstream 5000 false chrUNKNOWN: 4498879-4503878 Zea mays PH207
Zm00008a039320 5.0kb downstream 5.0kb downstream 21403 true chrUNKNOWN: 4503879-4525281 Zea mays PH207
Zm00008a039320 5.0kb downstream 5.0kb downstream 5000 false chrUNKNOWN: 4520282-4525281 Zea mays PH207
Zm00008a039320 10.0kb upstream 10.0kb upstream 26403 true chrUNKNOWN: 4493879-4520281 Zea mays PH207
Zm00008a039320 10.0kb upstream 10.0kb upstream 10000 false chrUNKNOWN: 4493879-4503878 Zea mays PH207
Zm00008a039320 10.0kb downstream 10.0kb downstream 26403 true chrUNKNOWN: 4503879-4530281 Zea mays PH207
Zm00008a039320 10.0kb downstream 10.0kb downstream 10000 false chrUNKNOWN: 4520282-4530281 Zea mays PH207

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121850352 5273 Angiosperm Singleton cluster - no MSA
122125851 5267 Panicoideae Singleton cluster - no MSA
124419267 5269 Grass Singleton cluster - no MSA
121121033 5274 Embryophyte Singleton cluster - no MSA
123160158 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

1 Strain

DB identifier