Gene : Potri.001G368900 P. trichocarpa v3.1
Defline:  (1 of 11) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  3808
Name:  ? Potri.001G368900 Secondary Identifier:  ? PAC:37277827
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.001G368900 0.5kb upstream 0.5kb upstream 3643 true Chr01: 38286409-38290051 Populus trichocarpa
Potri.001G368900 0.5kb upstream 0.5kb upstream 500 false Chr01: 38286409-38286908 Populus trichocarpa
Potri.001G368900 0.5kb downstream 0.5kb downstream 3643 true Chr01: 38286909-38290551 Populus trichocarpa
Potri.001G368900 0.5kb downstream 0.5kb downstream 500 false Chr01: 38290052-38290551 Populus trichocarpa
Potri.001G368900 1.0kb upstream 1.0kb upstream 4143 true Chr01: 38285909-38290051 Populus trichocarpa
Potri.001G368900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 38285909-38286908 Populus trichocarpa
Potri.001G368900 1.0kb downstream 1.0kb downstream 4143 true Chr01: 38286909-38291051 Populus trichocarpa
Potri.001G368900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 38290052-38291051 Populus trichocarpa
Potri.001G368900 2.0kb upstream 2.0kb upstream 5143 true Chr01: 38284909-38290051 Populus trichocarpa
Potri.001G368900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 38284909-38286908 Populus trichocarpa
Potri.001G368900 2.0kb downstream 2.0kb downstream 5143 true Chr01: 38286909-38292051 Populus trichocarpa
Potri.001G368900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 38290052-38292051 Populus trichocarpa
Potri.001G368900 5.0kb upstream 5.0kb upstream 8143 true Chr01: 38281909-38290051 Populus trichocarpa
Potri.001G368900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 38281909-38286908 Populus trichocarpa
Potri.001G368900 5.0kb downstream 5.0kb downstream 8143 true Chr01: 38286909-38295051 Populus trichocarpa
Potri.001G368900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 38290052-38295051 Populus trichocarpa
Potri.001G368900 10.0kb upstream 10.0kb upstream 13143 true Chr01: 38276909-38290051 Populus trichocarpa
Potri.001G368900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 38276909-38286908 Populus trichocarpa
Potri.001G368900 10.0kb downstream 10.0kb downstream 13143 true Chr01: 38286909-38300051 Populus trichocarpa
Potri.001G368900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 38290052-38300051 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122426544 5262 Malpighiales View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain