Gene : Potri.002G056800 P. trichocarpa v3.1
Defline:  (1 of 5) K02291 - phytoene synthase (crtB) Genomic Order:  595
Name:  ? Potri.002G056800 Secondary Identifier:  ? PAC:37256122
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa CAROTENOID-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-6475 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.002G056800 0.5kb upstream 0.5kb upstream 3795 true Chr02: 3799094-3802888 Populus trichocarpa
Potri.002G056800 0.5kb upstream 0.5kb upstream 500 false Chr02: 3802389-3802888 Populus trichocarpa
Potri.002G056800 0.5kb downstream 0.5kb downstream 3795 true Chr02: 3798594-3802388 Populus trichocarpa
Potri.002G056800 0.5kb downstream 0.5kb downstream 500 false Chr02: 3798594-3799093 Populus trichocarpa
Potri.002G056800 1.0kb upstream 1.0kb upstream 4295 true Chr02: 3799094-3803388 Populus trichocarpa
Potri.002G056800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 3802389-3803388 Populus trichocarpa
Potri.002G056800 1.0kb downstream 1.0kb downstream 4295 true Chr02: 3798094-3802388 Populus trichocarpa
Potri.002G056800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 3798094-3799093 Populus trichocarpa
Potri.002G056800 2.0kb upstream 2.0kb upstream 5295 true Chr02: 3799094-3804388 Populus trichocarpa
Potri.002G056800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 3802389-3804388 Populus trichocarpa
Potri.002G056800 2.0kb downstream 2.0kb downstream 5295 true Chr02: 3797094-3802388 Populus trichocarpa
Potri.002G056800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 3797094-3799093 Populus trichocarpa
Potri.002G056800 5.0kb upstream 5.0kb upstream 8295 true Chr02: 3799094-3807388 Populus trichocarpa
Potri.002G056800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 3802389-3807388 Populus trichocarpa
Potri.002G056800 5.0kb downstream 5.0kb downstream 8295 true Chr02: 3794094-3802388 Populus trichocarpa
Potri.002G056800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 3794094-3799093 Populus trichocarpa
Potri.002G056800 10.0kb upstream 10.0kb upstream 13295 true Chr02: 3799094-3812388 Populus trichocarpa
Potri.002G056800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 3802389-3812388 Populus trichocarpa
Potri.002G056800 10.0kb downstream 10.0kb downstream 13295 true Chr02: 3789094-3802388 Populus trichocarpa
Potri.002G056800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 3789094-3799093 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
122463216 5262 Malpighiales View MSA
124251202 5268 Malvidae View MSA
124069921 5270 Rosid View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain