Gene : Potri.005G017900 P. trichocarpa v3.1
Defline:  (1 of 3) K02703 - photosystem II P680 reaction center D1 protein (psbA) Genomic Order:  190
Name:  ? Potri.005G017900 Secondary Identifier:  ? PAC:37266194
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PHOTOALL-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-101 Populus trichocarpa pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.005G017900 0.5kb upstream 0.5kb upstream 812 true Chr05: 1439800-1440611 Populus trichocarpa
Potri.005G017900 0.5kb upstream 0.5kb upstream 500 false Chr05: 1440112-1440611 Populus trichocarpa
Potri.005G017900 0.5kb downstream 0.5kb downstream 812 true Chr05: 1439300-1440111 Populus trichocarpa
Potri.005G017900 0.5kb downstream 0.5kb downstream 500 false Chr05: 1439300-1439799 Populus trichocarpa
Potri.005G017900 1.0kb upstream 1.0kb upstream 1312 true Chr05: 1439800-1441111 Populus trichocarpa
Potri.005G017900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 1440112-1441111 Populus trichocarpa
Potri.005G017900 1.0kb downstream 1.0kb downstream 1312 true Chr05: 1438800-1440111 Populus trichocarpa
Potri.005G017900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 1438800-1439799 Populus trichocarpa
Potri.005G017900 2.0kb upstream 2.0kb upstream 2312 true Chr05: 1439800-1442111 Populus trichocarpa
Potri.005G017900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 1440112-1442111 Populus trichocarpa
Potri.005G017900 2.0kb downstream 2.0kb downstream 2312 true Chr05: 1437800-1440111 Populus trichocarpa
Potri.005G017900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 1437800-1439799 Populus trichocarpa
Potri.005G017900 5.0kb upstream 5.0kb upstream 5312 true Chr05: 1439800-1445111 Populus trichocarpa
Potri.005G017900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 1440112-1445111 Populus trichocarpa
Potri.005G017900 5.0kb downstream 5.0kb downstream 5312 true Chr05: 1434800-1440111 Populus trichocarpa
Potri.005G017900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 1434800-1439799 Populus trichocarpa
Potri.005G017900 10.0kb upstream 10.0kb upstream 10312 true Chr05: 1439800-1450111 Populus trichocarpa
Potri.005G017900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 1440112-1450111 Populus trichocarpa
Potri.005G017900 10.0kb downstream 10.0kb downstream 10312 true Chr05: 1429800-1440111 Populus trichocarpa
Potri.005G017900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 1429800-1439799 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122393167 5262 Malpighiales Singleton cluster - no MSA
124190691 5268 Malvidae Singleton cluster - no MSA
124074892 5270 Rosid View MSA
123753442 5271 Pentapetalae View MSA
122794783 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain