Gene : Potri.005G127100 P. trichocarpa v3.1
Defline:  (1 of 6) K13789 - geranylgeranyl diphosphate synthase, type II (GGPS) Genomic Order:  1342
Name:  ? Potri.005G127100 Secondary Identifier:  ? PAC:37264951
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-5120 Populus trichocarpa pathologic  
Ptrichocarpa PWY-5910 Populus trichocarpa pathologic  

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.005G127100 0.5kb upstream 0.5kb upstream 3467 true Chr05: 10018903-10022369 Populus trichocarpa
Potri.005G127100 0.5kb upstream 0.5kb upstream 500 false Chr05: 10018903-10019402 Populus trichocarpa
Potri.005G127100 0.5kb downstream 0.5kb downstream 3467 true Chr05: 10019403-10022869 Populus trichocarpa
Potri.005G127100 0.5kb downstream 0.5kb downstream 500 false Chr05: 10022370-10022869 Populus trichocarpa
Potri.005G127100 1.0kb upstream 1.0kb upstream 3967 true Chr05: 10018403-10022369 Populus trichocarpa
Potri.005G127100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 10018403-10019402 Populus trichocarpa
Potri.005G127100 1.0kb downstream 1.0kb downstream 3967 true Chr05: 10019403-10023369 Populus trichocarpa
Potri.005G127100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 10022370-10023369 Populus trichocarpa
Potri.005G127100 2.0kb upstream 2.0kb upstream 4967 true Chr05: 10017403-10022369 Populus trichocarpa
Potri.005G127100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 10017403-10019402 Populus trichocarpa
Potri.005G127100 2.0kb downstream 2.0kb downstream 4967 true Chr05: 10019403-10024369 Populus trichocarpa
Potri.005G127100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 10022370-10024369 Populus trichocarpa
Potri.005G127100 5.0kb upstream 5.0kb upstream 7967 true Chr05: 10014403-10022369 Populus trichocarpa
Potri.005G127100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 10014403-10019402 Populus trichocarpa
Potri.005G127100 5.0kb downstream 5.0kb downstream 7967 true Chr05: 10019403-10027369 Populus trichocarpa
Potri.005G127100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 10022370-10027369 Populus trichocarpa
Potri.005G127100 10.0kb upstream 10.0kb upstream 12967 true Chr05: 10009403-10022369 Populus trichocarpa
Potri.005G127100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 10009403-10019402 Populus trichocarpa
Potri.005G127100 10.0kb downstream 10.0kb downstream 12967 true Chr05: 10019403-10032369 Populus trichocarpa
Potri.005G127100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 10022370-10032369 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122456531 5262 Malpighiales View MSA
124237101 5268 Malvidae View MSA
124062615 5270 Rosid View MSA
123750127 5271 Pentapetalae View MSA
122794006 5272 Eudicot View MSA
122045672 5273 Angiosperm View MSA
121348382 5274 Embryophyte View MSA
123424390 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain