Gene : Potri.005G205800 P. trichocarpa v3.1
Defline:  (1 of 5) K02291 - phytoene synthase (crtB) Genomic Order:  2147
Name:  ? Potri.005G205800 Secondary Identifier:  ? PAC:37266316
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa CAROTENOID-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-6475 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.005G205800 0.5kb upstream 0.5kb upstream 3775 true Chr05: 22042301-22046075 Populus trichocarpa
Potri.005G205800 0.5kb upstream 0.5kb upstream 500 false Chr05: 22042301-22042800 Populus trichocarpa
Potri.005G205800 0.5kb downstream 0.5kb downstream 3775 true Chr05: 22042801-22046575 Populus trichocarpa
Potri.005G205800 0.5kb downstream 0.5kb downstream 500 false Chr05: 22046076-22046575 Populus trichocarpa
Potri.005G205800 1.0kb upstream 1.0kb upstream 4275 true Chr05: 22041801-22046075 Populus trichocarpa
Potri.005G205800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 22041801-22042800 Populus trichocarpa
Potri.005G205800 1.0kb downstream 1.0kb downstream 4275 true Chr05: 22042801-22047075 Populus trichocarpa
Potri.005G205800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 22046076-22047075 Populus trichocarpa
Potri.005G205800 2.0kb upstream 2.0kb upstream 5275 true Chr05: 22040801-22046075 Populus trichocarpa
Potri.005G205800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 22040801-22042800 Populus trichocarpa
Potri.005G205800 2.0kb downstream 2.0kb downstream 5275 true Chr05: 22042801-22048075 Populus trichocarpa
Potri.005G205800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 22046076-22048075 Populus trichocarpa
Potri.005G205800 5.0kb upstream 5.0kb upstream 8275 true Chr05: 22037801-22046075 Populus trichocarpa
Potri.005G205800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 22037801-22042800 Populus trichocarpa
Potri.005G205800 5.0kb downstream 5.0kb downstream 8275 true Chr05: 22042801-22051075 Populus trichocarpa
Potri.005G205800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 22046076-22051075 Populus trichocarpa
Potri.005G205800 10.0kb upstream 10.0kb upstream 13275 true Chr05: 22032801-22046075 Populus trichocarpa
Potri.005G205800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 22032801-22042800 Populus trichocarpa
Potri.005G205800 10.0kb downstream 10.0kb downstream 13275 true Chr05: 22042801-22056075 Populus trichocarpa
Potri.005G205800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 22046076-22056075 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
122463216 5262 Malpighiales View MSA
124251202 5268 Malvidae View MSA
124069921 5270 Rosid View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain