Gene : Potri.005G179500 P. trichocarpa v3.1

Defline:  (1 of 2) K11858 - ubiquitin carboxyl-terminal hydrolase 48 [EC:3.4.19.12] (USP48) Genomic Order:  1874
Name:  ? Potri.005G179500 Secondary Identifier:  ? PAC:37265019

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.005G179500 0.5kb upstream 0.5kb upstream 9314 true Chr05: 19577717-19587030 Populus trichocarpa
Potri.005G179500 0.5kb upstream 0.5kb upstream 500 false Chr05: 19577717-19578216 Populus trichocarpa
Potri.005G179500 0.5kb downstream 0.5kb downstream 9314 true Chr05: 19578217-19587530 Populus trichocarpa
Potri.005G179500 0.5kb downstream 0.5kb downstream 500 false Chr05: 19587031-19587530 Populus trichocarpa
Potri.005G179500 1.0kb upstream 1.0kb upstream 9814 true Chr05: 19577217-19587030 Populus trichocarpa
Potri.005G179500 1.0kb upstream 1.0kb upstream 1000 false Chr05: 19577217-19578216 Populus trichocarpa
Potri.005G179500 1.0kb downstream 1.0kb downstream 9814 true Chr05: 19578217-19588030 Populus trichocarpa
Potri.005G179500 1.0kb downstream 1.0kb downstream 1000 false Chr05: 19587031-19588030 Populus trichocarpa
Potri.005G179500 2.0kb upstream 2.0kb upstream 10814 true Chr05: 19576217-19587030 Populus trichocarpa
Potri.005G179500 2.0kb upstream 2.0kb upstream 2000 false Chr05: 19576217-19578216 Populus trichocarpa
Potri.005G179500 2.0kb downstream 2.0kb downstream 10814 true Chr05: 19578217-19589030 Populus trichocarpa
Potri.005G179500 2.0kb downstream 2.0kb downstream 2000 false Chr05: 19587031-19589030 Populus trichocarpa
Potri.005G179500 5.0kb upstream 5.0kb upstream 13814 true Chr05: 19573217-19587030 Populus trichocarpa
Potri.005G179500 5.0kb upstream 5.0kb upstream 5000 false Chr05: 19573217-19578216 Populus trichocarpa
Potri.005G179500 5.0kb downstream 5.0kb downstream 13814 true Chr05: 19578217-19592030 Populus trichocarpa
Potri.005G179500 5.0kb downstream 5.0kb downstream 5000 false Chr05: 19587031-19592030 Populus trichocarpa
Potri.005G179500 10.0kb upstream 10.0kb upstream 18814 true Chr05: 19568217-19587030 Populus trichocarpa
Potri.005G179500 10.0kb upstream 10.0kb upstream 10000 false Chr05: 19568217-19578216 Populus trichocarpa
Potri.005G179500 10.0kb downstream 10.0kb downstream 18814 true Chr05: 19578217-19597030 Populus trichocarpa
Potri.005G179500 10.0kb downstream 10.0kb downstream 10000 false Chr05: 19587031-19597030 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122463439 5262 Malpighiales View MSA
124243585 5268 Malvidae View MSA
124061105 5270 Rosid View MSA
123737651 5271 Pentapetalae View MSA
122791193 5272 Eudicot View MSA
122043849 5273 Angiosperm View MSA
121347383 5274 Embryophyte View MSA
123427406 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain