Gene : Potri.005G178300 P. trichocarpa v3.1
Defline:  (1 of 2) 1.14.13.122 - Chlorophyllide-a oxygenase / Cholorophyll-b synthase Genomic Order:  1862
Name:  ? Potri.005G178300 Secondary Identifier:  ? PAC:37262436
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-5068 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.005G178300 0.5kb upstream 0.5kb upstream 4844 true Chr05: 19430856-19435699 Populus trichocarpa
Potri.005G178300 0.5kb upstream 0.5kb upstream 500 false Chr05: 19430856-19431355 Populus trichocarpa
Potri.005G178300 0.5kb downstream 0.5kb downstream 4844 true Chr05: 19431356-19436199 Populus trichocarpa
Potri.005G178300 0.5kb downstream 0.5kb downstream 500 false Chr05: 19435700-19436199 Populus trichocarpa
Potri.005G178300 1.0kb upstream 1.0kb upstream 5344 true Chr05: 19430356-19435699 Populus trichocarpa
Potri.005G178300 1.0kb upstream 1.0kb upstream 1000 false Chr05: 19430356-19431355 Populus trichocarpa
Potri.005G178300 1.0kb downstream 1.0kb downstream 5344 true Chr05: 19431356-19436699 Populus trichocarpa
Potri.005G178300 1.0kb downstream 1.0kb downstream 1000 false Chr05: 19435700-19436699 Populus trichocarpa
Potri.005G178300 2.0kb upstream 2.0kb upstream 6344 true Chr05: 19429356-19435699 Populus trichocarpa
Potri.005G178300 2.0kb upstream 2.0kb upstream 2000 false Chr05: 19429356-19431355 Populus trichocarpa
Potri.005G178300 2.0kb downstream 2.0kb downstream 6344 true Chr05: 19431356-19437699 Populus trichocarpa
Potri.005G178300 2.0kb downstream 2.0kb downstream 2000 false Chr05: 19435700-19437699 Populus trichocarpa
Potri.005G178300 5.0kb upstream 5.0kb upstream 9344 true Chr05: 19426356-19435699 Populus trichocarpa
Potri.005G178300 5.0kb upstream 5.0kb upstream 5000 false Chr05: 19426356-19431355 Populus trichocarpa
Potri.005G178300 5.0kb downstream 5.0kb downstream 9344 true Chr05: 19431356-19440699 Populus trichocarpa
Potri.005G178300 5.0kb downstream 5.0kb downstream 5000 false Chr05: 19435700-19440699 Populus trichocarpa
Potri.005G178300 10.0kb upstream 10.0kb upstream 14344 true Chr05: 19421356-19435699 Populus trichocarpa
Potri.005G178300 10.0kb upstream 10.0kb upstream 10000 false Chr05: 19421356-19431355 Populus trichocarpa
Potri.005G178300 10.0kb downstream 10.0kb downstream 14344 true Chr05: 19431356-19445699 Populus trichocarpa
Potri.005G178300 10.0kb downstream 10.0kb downstream 10000 false Chr05: 19435700-19445699 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122450511 5262 Malpighiales View MSA
124242720 5268 Malvidae View MSA
124067782 5270 Rosid View MSA
123744269 5271 Pentapetalae View MSA
122787506 5272 Eudicot View MSA
122048070 5273 Angiosperm View MSA
123429167 5275 Viridiplantae View MSA
121348979 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain