Gene : Potri.006G141600 P. trichocarpa v3.1
Defline:  (1 of 19) 1.10.3.9 - Photosystem II Genomic Order:  1454
Name:  ? Potri.006G141600 Secondary Identifier:  ? PAC:37243606
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PHOTOALL-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-101 Populus trichocarpa pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.006G141600 0.5kb upstream 0.5kb upstream 1125 true Chr06: 11950372-11951496 Populus trichocarpa
Potri.006G141600 0.5kb upstream 0.5kb upstream 500 false Chr06: 11950372-11950871 Populus trichocarpa
Potri.006G141600 0.5kb downstream 0.5kb downstream 1125 true Chr06: 11950872-11951996 Populus trichocarpa
Potri.006G141600 0.5kb downstream 0.5kb downstream 500 false Chr06: 11951497-11951996 Populus trichocarpa
Potri.006G141600 1.0kb upstream 1.0kb upstream 1625 true Chr06: 11949872-11951496 Populus trichocarpa
Potri.006G141600 1.0kb upstream 1.0kb upstream 1000 false Chr06: 11949872-11950871 Populus trichocarpa
Potri.006G141600 1.0kb downstream 1.0kb downstream 1625 true Chr06: 11950872-11952496 Populus trichocarpa
Potri.006G141600 1.0kb downstream 1.0kb downstream 1000 false Chr06: 11951497-11952496 Populus trichocarpa
Potri.006G141600 2.0kb upstream 2.0kb upstream 2625 true Chr06: 11948872-11951496 Populus trichocarpa
Potri.006G141600 2.0kb upstream 2.0kb upstream 2000 false Chr06: 11948872-11950871 Populus trichocarpa
Potri.006G141600 2.0kb downstream 2.0kb downstream 2625 true Chr06: 11950872-11953496 Populus trichocarpa
Potri.006G141600 2.0kb downstream 2.0kb downstream 2000 false Chr06: 11951497-11953496 Populus trichocarpa
Potri.006G141600 5.0kb upstream 5.0kb upstream 5625 true Chr06: 11945872-11951496 Populus trichocarpa
Potri.006G141600 5.0kb upstream 5.0kb upstream 5000 false Chr06: 11945872-11950871 Populus trichocarpa
Potri.006G141600 5.0kb downstream 5.0kb downstream 5625 true Chr06: 11950872-11956496 Populus trichocarpa
Potri.006G141600 5.0kb downstream 5.0kb downstream 5000 false Chr06: 11951497-11956496 Populus trichocarpa
Potri.006G141600 10.0kb upstream 10.0kb upstream 10625 true Chr06: 11940872-11951496 Populus trichocarpa
Potri.006G141600 10.0kb upstream 10.0kb upstream 10000 false Chr06: 11940872-11950871 Populus trichocarpa
Potri.006G141600 10.0kb downstream 10.0kb downstream 10625 true Chr06: 11950872-11961496 Populus trichocarpa
Potri.006G141600 10.0kb downstream 10.0kb downstream 10000 false Chr06: 11951497-11961496 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122393826 5262 Malpighiales Singleton cluster - no MSA
124191286 5268 Malvidae Singleton cluster - no MSA
124073414 5270 Rosid View MSA
123753260 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain