Gene : Potri.012G036200 P. trichocarpa v3.1
Defline:  (1 of 3) K01899 - succinyl-CoA synthetase alpha subunit (LSC1) Genomic Order:  382
Name:  ? Potri.012G036200 Secondary Identifier:  ? PAC:37281620
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-5464 Populus trichocarpa pathologic  
Ptrichocarpa PWY-5690 Populus trichocarpa pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.012G036200 0.5kb upstream 0.5kb upstream 5325 true Chr12: 3237431-3242755 Populus trichocarpa
Potri.012G036200 0.5kb upstream 0.5kb upstream 500 false Chr12: 3237431-3237930 Populus trichocarpa
Potri.012G036200 0.5kb downstream 0.5kb downstream 5325 true Chr12: 3237931-3243255 Populus trichocarpa
Potri.012G036200 0.5kb downstream 0.5kb downstream 500 false Chr12: 3242756-3243255 Populus trichocarpa
Potri.012G036200 1.0kb upstream 1.0kb upstream 5825 true Chr12: 3236931-3242755 Populus trichocarpa
Potri.012G036200 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3236931-3237930 Populus trichocarpa
Potri.012G036200 1.0kb downstream 1.0kb downstream 5825 true Chr12: 3237931-3243755 Populus trichocarpa
Potri.012G036200 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3242756-3243755 Populus trichocarpa
Potri.012G036200 2.0kb upstream 2.0kb upstream 6825 true Chr12: 3235931-3242755 Populus trichocarpa
Potri.012G036200 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3235931-3237930 Populus trichocarpa
Potri.012G036200 2.0kb downstream 2.0kb downstream 6825 true Chr12: 3237931-3244755 Populus trichocarpa
Potri.012G036200 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3242756-3244755 Populus trichocarpa
Potri.012G036200 5.0kb upstream 5.0kb upstream 9825 true Chr12: 3232931-3242755 Populus trichocarpa
Potri.012G036200 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3232931-3237930 Populus trichocarpa
Potri.012G036200 5.0kb downstream 5.0kb downstream 9825 true Chr12: 3237931-3247755 Populus trichocarpa
Potri.012G036200 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3242756-3247755 Populus trichocarpa
Potri.012G036200 10.0kb upstream 10.0kb upstream 14825 true Chr12: 3227931-3242755 Populus trichocarpa
Potri.012G036200 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3227931-3237930 Populus trichocarpa
Potri.012G036200 10.0kb downstream 10.0kb downstream 14825 true Chr12: 3237931-3252755 Populus trichocarpa
Potri.012G036200 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3242756-3252755 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122460895 5262 Malpighiales View MSA
124250817 5268 Malvidae View MSA
124071271 5270 Rosid View MSA
123744798 5271 Pentapetalae View MSA
122787057 5272 Eudicot View MSA
122044805 5273 Angiosperm View MSA
121349115 5274 Embryophyte View MSA
123424705 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain