Gene : Potri.013G053100 P. trichocarpa v3.1
Defline:  (1 of 1) PTHR33970:SF1 - VIOLAXANTHIN DE-EPOXIDASE, CHLOROPLASTIC Genomic Order:  543
Name:  ? Potri.013G053100 Secondary Identifier:  ? PAC:37232728
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa CAROTENOID-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-5945 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.013G053100 0.5kb upstream 0.5kb upstream 4212 true Chr13: 3970867-3975078 Populus trichocarpa
Potri.013G053100 0.5kb upstream 0.5kb upstream 500 false Chr13: 3970867-3971366 Populus trichocarpa
Potri.013G053100 0.5kb downstream 0.5kb downstream 4212 true Chr13: 3971367-3975578 Populus trichocarpa
Potri.013G053100 0.5kb downstream 0.5kb downstream 500 false Chr13: 3975079-3975578 Populus trichocarpa
Potri.013G053100 1.0kb upstream 1.0kb upstream 4712 true Chr13: 3970367-3975078 Populus trichocarpa
Potri.013G053100 1.0kb upstream 1.0kb upstream 1000 false Chr13: 3970367-3971366 Populus trichocarpa
Potri.013G053100 1.0kb downstream 1.0kb downstream 4712 true Chr13: 3971367-3976078 Populus trichocarpa
Potri.013G053100 1.0kb downstream 1.0kb downstream 1000 false Chr13: 3975079-3976078 Populus trichocarpa
Potri.013G053100 2.0kb upstream 2.0kb upstream 5712 true Chr13: 3969367-3975078 Populus trichocarpa
Potri.013G053100 2.0kb upstream 2.0kb upstream 2000 false Chr13: 3969367-3971366 Populus trichocarpa
Potri.013G053100 2.0kb downstream 2.0kb downstream 5712 true Chr13: 3971367-3977078 Populus trichocarpa
Potri.013G053100 2.0kb downstream 2.0kb downstream 2000 false Chr13: 3975079-3977078 Populus trichocarpa
Potri.013G053100 5.0kb upstream 5.0kb upstream 8712 true Chr13: 3966367-3975078 Populus trichocarpa
Potri.013G053100 5.0kb upstream 5.0kb upstream 5000 false Chr13: 3966367-3971366 Populus trichocarpa
Potri.013G053100 5.0kb downstream 5.0kb downstream 8712 true Chr13: 3971367-3980078 Populus trichocarpa
Potri.013G053100 5.0kb downstream 5.0kb downstream 5000 false Chr13: 3975079-3980078 Populus trichocarpa
Potri.013G053100 10.0kb upstream 10.0kb upstream 13712 true Chr13: 3961367-3975078 Populus trichocarpa
Potri.013G053100 10.0kb upstream 10.0kb upstream 10000 false Chr13: 3961367-3971366 Populus trichocarpa
Potri.013G053100 10.0kb downstream 10.0kb downstream 13712 true Chr13: 3971367-3985078 Populus trichocarpa
Potri.013G053100 10.0kb downstream 10.0kb downstream 10000 false Chr13: 3975079-3985078 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122461380 5262 Malpighiales View MSA
124238340 5268 Malvidae View MSA
124063145 5270 Rosid View MSA
123739304 5271 Pentapetalae View MSA
122790516 5272 Eudicot View MSA
122041813 5273 Angiosperm View MSA
121344367 5274 Embryophyte View MSA
123425421 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain