Gene : Potri.013G143200 P. trichocarpa v3.1
Defline:  (1 of 3) K02703 - photosystem II P680 reaction center D1 protein (psbA) Genomic Order:  1473
Name:  ? Potri.013G143200 Secondary Identifier:  ? PAC:37233667
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PHOTOALL-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-101 Populus trichocarpa pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.013G143200 0.5kb upstream 0.5kb upstream 1611 true Chr13: 14894428-14896038 Populus trichocarpa
Potri.013G143200 0.5kb upstream 0.5kb upstream 500 false Chr13: 14894428-14894927 Populus trichocarpa
Potri.013G143200 0.5kb downstream 0.5kb downstream 1611 true Chr13: 14894928-14896538 Populus trichocarpa
Potri.013G143200 0.5kb downstream 0.5kb downstream 500 false Chr13: 14896039-14896538 Populus trichocarpa
Potri.013G143200 1.0kb upstream 1.0kb upstream 2111 true Chr13: 14893928-14896038 Populus trichocarpa
Potri.013G143200 1.0kb upstream 1.0kb upstream 1000 false Chr13: 14893928-14894927 Populus trichocarpa
Potri.013G143200 1.0kb downstream 1.0kb downstream 2111 true Chr13: 14894928-14897038 Populus trichocarpa
Potri.013G143200 1.0kb downstream 1.0kb downstream 1000 false Chr13: 14896039-14897038 Populus trichocarpa
Potri.013G143200 2.0kb upstream 2.0kb upstream 3111 true Chr13: 14892928-14896038 Populus trichocarpa
Potri.013G143200 2.0kb upstream 2.0kb upstream 2000 false Chr13: 14892928-14894927 Populus trichocarpa
Potri.013G143200 2.0kb downstream 2.0kb downstream 3111 true Chr13: 14894928-14898038 Populus trichocarpa
Potri.013G143200 2.0kb downstream 2.0kb downstream 2000 false Chr13: 14896039-14898038 Populus trichocarpa
Potri.013G143200 5.0kb upstream 5.0kb upstream 6111 true Chr13: 14889928-14896038 Populus trichocarpa
Potri.013G143200 5.0kb upstream 5.0kb upstream 5000 false Chr13: 14889928-14894927 Populus trichocarpa
Potri.013G143200 5.0kb downstream 5.0kb downstream 6111 true Chr13: 14894928-14901038 Populus trichocarpa
Potri.013G143200 5.0kb downstream 5.0kb downstream 5000 false Chr13: 14896039-14901038 Populus trichocarpa
Potri.013G143200 10.0kb upstream 10.0kb upstream 11111 true Chr13: 14884928-14896038 Populus trichocarpa
Potri.013G143200 10.0kb upstream 10.0kb upstream 10000 false Chr13: 14884928-14894927 Populus trichocarpa
Potri.013G143200 10.0kb downstream 10.0kb downstream 11111 true Chr13: 14894928-14906038 Populus trichocarpa
Potri.013G143200 10.0kb downstream 10.0kb downstream 10000 false Chr13: 14896039-14906038 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122457552 5262 Malpighiales View MSA
124254176 5268 Malvidae View MSA
124074858 5270 Rosid View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain